Browse Element(s) Details


Os.49308.1.A1_at

Description gb:AK073102.1
DB_XREF= gi:32983125
TID=Os.49308.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49308 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033022E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022E04, full insert sequence.
FL= gb:AK073102.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0494011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04910Os.40360.1.S1_x_at1/113+2336410..2337645hypothetical protein
LOC_Os03g04920Os.14946.1.S1_at11/113+2346967..2353621ABC transporter family protein, putative, expressed
LOC_Os03g04930Os.9536.1.S1_at11/113+2354327..2357146pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g04940Os.49308.1.A1_at11/113+2359148..2363763expressed protein
LOC_Os03g04950OsAffx.12734.1.S1_at11/113+2366931..2369282subtilase family protein, putative
LOC_Os03g04960Os.17914.1.S1_at10/113+2375853..2379694Cysteinyl-tRNA synthetase, putative, expressed
LOC_Os03g04970Os.8911.1.S1_at11/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os03g04970Os.54271.1.S1_at1/113+2380125..2385850Chaperonin CPN60-1, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49308.1.A1_at--749--5791Chr03:2359700..2359724 (25 bp)
GACGCAGAATCTCTCGATCTTCTTA
LOC_Os03g04940
Os.49308.1.A1_at--343--331Chr03:2359669..2359693 (25 bp)
ATACTGCCTCTAACTTGGAGCCTGA
LOC_Os03g04940
Os.49308.1.A1_at--447--5471Chr03:2359537..2359561 (25 bp)
GAACTGACGTTACCTACAATCCTGA
LOC_Os03g04940
Os.49308.1.A1_at--461--231Chr03:2359508..2359532 (25 bp)
ATATTTCCCCTCTTCAAGACTGCTA
LOC_Os03g04940
Os.49308.1.A1_at--1100--6551Chr03:2359463..2359487 (25 bp)
GATTCAGATGCAGCCCTTATTCTTT
LOC_Os03g04940
Os.49308.1.A1_at--908--10211Chr03:2359446..2359470 (25 bp)
TATTCTTTGCTACATTCAGCGCCGA
LOC_Os03g04940
Os.49308.1.A1_at--291--1011Chr03:2359414..2359438 (25 bp)
AGGATTCTATCCTTTCTACCGCAAT
LOC_Os03g04940
Os.49308.1.A1_at--76--3211Chr03:2359393..2359417 (25 bp)
CAATGGCCCAGGGTTTCAGGCTTGT
LOC_Os03g04940
Os.49308.1.A1_at--21--7871Chr03:2359334..2359358 (25 bp)
GGTATCATTAGCTCTTGGTTCTGTG
LOC_Os03g04940
Os.49308.1.A1_at--646--5271Chr03:2359284..2359308 (25 bp)
GAATGCAACGCTTTCCATACTGTAT
LOC_Os03g04940
Os.49308.1.A1_at--543--6531Chr03:2359204..2359228 (25 bp)
GATTTCCCACCATTATTGTACCAGA
LOC_Os03g04940
Target Sequence 
GACGCAGAATCTCTCGATCTTCTTAGAGAAAATACTGCCTCTAACTTGGAGCCTGATTTGCTTAAAAAGATTCTGATCAG
GAAGTTATTTTGGGGCGACAAAGATGATCTGAAGGCAGTCAGGGNGCTTTCCAGCGATGGAGCAGGTTTTGATTGCATAA
TAGGAACTGACGTTACCTACAATCCTGACGCTATATTTCCCCTCTTCAAGACTGCTAGGGAACTAATTTCTAATAAGGAT
TCAGATGCAGCCCTTATTCTTTGCTACATTCAGCGCCGAGTTGATGAGGATTCTATCCTTTCTACCGCAATGGCCCAGGG
TTTCAGGCTTGTGGACAAGTGGATAAATGGAATTCACGAGAGTAATGGTATCATTAGCTCTTGGTTCTGTGGTAATGATG
TTTGCAGTTCTTTCAGGAATGCAACGCTTTCCATACTGTATTTTCAGGTGTGAGACTNTGATGTTTAGCTGAATTTCATG
CATTTCATTACTTGGTGATTTCCCACCATTATTGTACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49308.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis