Browse Element(s) Details


Os.4936.1.S1_at

Description gb:AK121778.1
DB_XREF= gi:37991401
TID=Os.4936.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093F12, full insert sequence.
FL= gb:AK064905.1 gb:AK121778.1 gb:AK061792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2134011/11Permease I, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21320OsAffx.20387.1.S1_x_at2/119+12856015..12863188retrotransposon protein, putative, unclassified
LOC_Os09g21320OsAffx.10632.1.S1_at1/119+12856015..12863188retrotransposon protein, putative, unclassified
LOC_Os09g21330OsAffx.6358.1.S1_at11/119+12867346..12868395hypothetical protein
LOC_Os09g21340Os.4936.1.S1_at11/119+12883070..12887548Permease I, putative, expressed
LOC_Os09g21350NANA9+12889630..12891480retrotransposon protein, putative, LINE subclass
LOC_Os09g21360NANA9+12891978..12896016expressed protein
LOC_Os09g21370Os.17577.1.S1_x_at11/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370Os.17577.1.S2_at11/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370OsAffx.18976.1.S1_x_at6/119+12896571..12898548Papain family cysteine protease containing protein, expressed
LOC_Os09g21370OsAffx.18976.1.S1_at1/119+12896571..12898548Papain family cysteine protease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4936.1.S1_at--925--2971Chr09:12886857..12886881 (25 bp)
AATGAGTACACAGCTGTTGCAGGTT
LOC_Os09g21340
Os.4936.1.S1_at--677--5011Chr09:12886875..12886899 (25 bp)
GCAGGTTATGGACCAGTGCACACTG
LOC_Os09g21340
Os.4936.1.S1_at--980--6851Chr09:12887055..12887079 (25 bp)
GTTTGTCGCGGGTCTTGTGGCCTAC
LOC_Os09g21340
Os.4936.1.S1_at--123--5631Chr09:12887086..12887110 (25 bp)
GACAACACGATCGAGACGCACAATA
LOC_Os09g21340
Os.4936.1.S1_at--1071--3131Chr09:12887186..12887210 (25 bp)
AATTCTACTCGTTACCGTTCAATCT
LOC_Os09g21340
Os.4936.1.S1_at--254--2831Chr09:12887215..12887239 (25 bp)
AAGTTCTTCCCTGCTGTCTGAATGA
LOC_Os09g21340
Os.4936.1.S1_at--983--6411Chr09:12887238..12887262 (25 bp)
GATCTAGCAAATGTCACCCAAGCAA
LOC_Os09g21340
Os.4936.1.S1_at--677--8431Chr09:12887293..12887317 (25 bp)
GGCCTTCTTCAGTGTTGCTGTGCGT
LOC_Os09g21340
Os.4936.1.S1_at--265--4731Chr09:12887309..12887333 (25 bp)
GCTGTGCGTCAGTTTTGTGTACTTA
LOC_Os09g21340
Os.4936.1.S1_at--488--3591Chr09:12887425..12887449 (25 bp)
CATTACCTAGGTCTTTCTCTTATCA
LOC_Os09g21340
Os.4936.1.S1_at--877--2111Chr09:12887470..12887494 (25 bp)
ACATGTGGCTTTTCTATCGGATAGT
LOC_Os09g21340
Target Sequence 
AATGAGTACACAGCTGTTGCAGGTTATGGACCAGTGCACACTGGTGCCAGATGGTTCAATGATATGATAAACGTGCCGTT
CTCGTCGAAGCCGTTTGTCGCGGGTCTTGTGGCCTACTTCCTCGACAACACGATCGAGACGCACAATAACACGGTGAGGA
AGGATAGAGGCTACCATTGGTGGGACAAATTCAGGAGCTTCAAGAAAGACGCGAGGAGCGAAGAATTCTACTCGTTACCG
TTCAATCTGAACAAGTTCTTCCCTGCTGTCTGAATGATCTAGCAAATGTCACCCAAGCAAAAATGGTTCATGTCTGAACA
TAATTCTGCTGGCCTTCTTCAGTGTTGCTGTGCGTCAGTTTTGTGTACTTATAATAGGCGAATCTTACTAATTGGACAAC
GGAGATGTGCCTTAGAATGGGAATATCATGTCTATTTTTTTGTCCTACAATGATTTATGTGTCATTACCTAGGTCTTTCT
CTTATCAAGTTGTCAATGACCCAATGTACATGTGGCTTTTCTATCGGATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis