Browse Element(s) Details


Os.49380.1.S1_s_at

Description gb:AK119330.1
DB_XREF= gi:37988953
TID=Os.49380.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-B06, full insert sequence.
FL= gb:AK119330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2789011/11NPK2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27870Os.12227.1.S1_at1/116+15794378..15796244Signal recognition particle receptor beta subunit, putative
LOC_Os06g27880Os.31535.1.A1_at1/116+15797382..15806061retrotransposon protein, putative, unclassified
LOC_Os06g27890Os.49380.1.S1_s_at11/116+15810010..15820846NPK2, putative, expressed
LOC_Os06g27890Os.10319.1.S1_at1/116+15810010..15820846NPK2, putative, expressed
LOC_Os06g27900Os.47463.1.S1_x_at5/116+15832176..15836327transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g27900Os.14491.2.S1_x_at4/116+15832176..15836327transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g27910Os.55419.1.S1_at11/116+15839816..15841662Oleosin family protein, expressed
LOC_Os06g27910OsAffx.4948.1.S1_at7/116+15839816..15841662Oleosin family protein, expressed
LOC_Os06g27910OsAffx.20954.1.A1_at1/116+15839816..15841662Oleosin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0009611biological_processresponse to wounding
GO:0009628biological_processresponse to abiotic stimulus
GO:0005737cellular_componentcytoplasm
GO:0004708molecular_functionMAP kinase kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49380.1.S1_s_at--703--3071Chr06:15810567..15810591 (25 bp)
AATCATGTCTTCAATGCTCTTCTAT
LOC_Os06g27890
Os.49380.1.S1_s_at--275--171Chr06:15810517..15810541 (25 bp)
ATTTTCTACATTCTGATATTGCCTC
LOC_Os06g27890
Os.49380.1.S1_s_at--715--71Chr06:15810500..15810524 (25 bp)
ATTGCCTCTGTTATCAACTGTGCTT
LOC_Os06g27890
Os.49380.1.S1_s_at--557--6652Chr03:35009896..35010233 (25 bp)
GTTGATAATGCATTCTCTCTAGGGA
NONE
Os.49380.1.S1_s_at--929--9511Chr06:15810447..15810471 (25 bp)
TCTCTCTAGGGATTGCTTTGTTTGC
LOC_Os06g27890
Os.49380.1.S1_s_at--1065--9831Chr06:15810419..15810443 (25 bp)
TAAATCCTATTTATGCTGTCATGGT
LOC_Os06g27890
Os.49380.1.S1_s_at--234--8731Chr06:15810403..15810427 (25 bp)
TGTCATGGTGCCACGGTGGGATTCA
LOC_Os06g27890
Os.49380.1.S1_s_at--587--2011Chr06:15810344..15810368 (25 bp)
ACTATACAATCCACGTCTCAAGACA
LOC_Os06g27890
Os.49380.1.S1_s_at--1013--7151Chr06:15810330..15810354 (25 bp)
GTCTCAAGACACTTAACTTTCTCTA
LOC_Os06g27890
Os.49380.1.S1_s_at--943--10151Chr06:15810300..15810324 (25 bp)
TATCGTGAAGTCTTCTGGCTTCATC
LOC_Os06g27890
Os.49380.1.S1_s_at--993--8291Chr06:15810284..15810308 (25 bp)
GGCTTCATCATTTTATGACTTCTTG
LOC_Os06g27890
Target Sequence 
AATCATGTCTTCAATGCTCTTCTATTATTTTTGCAATTGCAACAAATTTTATTTTCTACATTCTGATATTGCCTCTGTTA
TCAACTGTGCTTTGGTAGATTGATGATGTTGATAATGCATTCTCTCTAGGGATTGCTTTGTTTGCAGTTAAATCCTATTT
ATGCTGTCATGGTGCCACGGTGGGATTCAGATGGTTCAGGATTGTTGAAAGTTGCTGATGAAGACTATACAATCCACGTC
TCAAGACACTTAACTTTCTCTAAGTAATATCGTGAAGTCTTCTGGCTTCATCATTTTATGACTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49380.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis