Browse Element(s) Details


OsAffx.20954.1.A1_at

Description gb:XM_354169.1
DB_XREF= gi:35189771
GEN=P0668C05.14
TID=OsAffx.20954.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g279101/11Oleosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27890Os.49380.1.S1_s_at11/116+15810010..15820846NPK2, putative, expressed
LOC_Os06g27890Os.10319.1.S1_at1/116+15810010..15820846NPK2, putative, expressed
LOC_Os06g27900Os.47463.1.S1_x_at5/116+15832176..15836327transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g27900Os.14491.2.S1_x_at4/116+15832176..15836327transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g27910Os.55419.1.S1_at11/116+15839816..15841662Oleosin family protein, expressed
LOC_Os06g27910OsAffx.4948.1.S1_at7/116+15839816..15841662Oleosin family protein, expressed
LOC_Os06g27910OsAffx.20954.1.A1_at1/116+15839816..15841662Oleosin family protein, expressed
LOC_Os06g27920OsAffx.15634.1.S1_at11/116+15847048..15848044Quinone oxidoreductase, putative
LOC_Os06g27920Os.29966.1.S1_at1/116+15847048..15848044Quinone oxidoreductase, putative
LOC_Os06g27920Os.29966.1.S1_x_at1/116+15847048..15848044Quinone oxidoreductase, putative
LOC_Os06g27930NANA6+15848723..15851683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27940NANA6+15852050..15854500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27950NANA6+15854843..15857764retrotransposon protein, putative, unclassified
LOC_Os06g27960OsAffx.15635.1.S1_at11/116+15859646..15859909hypothetical protein
LOC_Os06g27970OsAffx.27841.1.S1_s_at10/116+15862236..15871575Wilms' tumor 1-associating protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019915biological_processsequestering of lipid
GO:0012511cellular_componentlipid storage body (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20954.1.A1_at--690--3831Chr07:7064169..7064193 (25 bp)
CTGCTCGGAGGTTCGGGCATTGCTT
NONE
OsAffx.20954.1.A1_at--689--7211Chr07:7064125..7064149 (25 bp)
GTCGTTGCGGCTTCCACAGGCACGG
NONE
OsAffx.20954.1.A1_at--741--9571Chr07:7064055..7064079 (25 bp)
TCTTCCTTGTTTGCCGTTGACGTAG
NONE
OsAffx.20954.1.A1_at--678--1411Chr07:7064019..7064043 (25 bp)
AGACACAGGCGATGCTGTTTGCTTC
NONE
OsAffx.20954.1.A1_at--835--7512Chr07:7062411..7062435 (25 bp)
GTGGATCCGGCTGCAGAAATGTCCT
NONE
OsAffx.20954.1.A1_at--1028--3392Chr07:7062398..7062422 (25 bp)
CAGAAATGTCCTGCGGGTTGACGGA
NONE
OsAffx.20954.1.A1_at--822--7132Chr07:7062354..7062378 (25 bp)
GTCTTGAGCCGCTGGAGCTTGTCTC
NONE
OsAffx.20954.1.A1_at--497--1552Chr07:7062283..7062307 (25 bp)
AGCTTGTCGCCGGTCAGATATTACG
NONE
OsAffx.20954.1.A1_at--81--9095Chr06:15840386..15840435 (25 bp)
TGCTCGATTCCGTTGGTTTCCAGCT
LOC_Os06g27910
OsAffx.20954.1.A1_at--651--6832Chr07:7062228..7062252 (25 bp)
GTTTCCAGCTTTCACTCCTGTGGAT
NONE
OsAffx.20954.1.A1_at--645--9272Chr07:7062213..7062237 (25 bp)
TCCTGTGGATCATCCCAGCTGATTT
NONE
Target Sequence 
CTGCTCGGAGGTTCGGGCATTGCTTGGTGGGCGAGCTCGGCGTCGTCGTTGCGGCTTCCACAGGCACGGCCGTCGCTGCT
TTCCTTTTTCTCTTCTTCTTCTTCTTCTTCTTGCTCTTCCTTGTTTGCCGTTGACGTAGCGCAGGCGGTGAGACACAGGC
GATGCTGTTTGCTTCCTTTTTTCTATTTTTCTTCTGTTCTTANTNGNNNGNTNNNCCCNNACNCNGNNNNNNGCNNNNNN
CTNNCNCNNCGTGAGCGGCGGCGGTTGTGGCCTACCCCACCGCAATCCGCCGCAGCGGCGCCATCCGCTACTTCCGATGG
GTGGATCCGGCTGCAGAAATGTCCTGCGGGTTGACGGAGCGCCCTCGGCGACGGCGTGTCTTGAGCCGCTGGAGCTTGTC
TCTCCTCTCCATCTTCGTCCGTCACCTGCCATCTCTCTTCGGACGACGAGCTTGTCGCCGGTCAGATATTACGTATTGCT
TTGTGATTTGCTCGATTCCGTTGGTTTCCAGCTTTCACTCCTGTGGATCATCCCAGCTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20954.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis