Browse Element(s) Details


OsAffx.27841.1.S1_s_at

Description tigr:9634.m02668
TID=OsAffx.27841.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to FKBP12 interacting protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2797010/11Wilms' tumor 1-associating protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27910Os.55419.1.S1_at11/116+15839816..15841662Oleosin family protein, expressed
LOC_Os06g27910OsAffx.4948.1.S1_at7/116+15839816..15841662Oleosin family protein, expressed
LOC_Os06g27910OsAffx.20954.1.A1_at1/116+15839816..15841662Oleosin family protein, expressed
LOC_Os06g27920OsAffx.15634.1.S1_at11/116+15847048..15848044Quinone oxidoreductase, putative
LOC_Os06g27920Os.29966.1.S1_at1/116+15847048..15848044Quinone oxidoreductase, putative
LOC_Os06g27920Os.29966.1.S1_x_at1/116+15847048..15848044Quinone oxidoreductase, putative
LOC_Os06g27930NANA6+15848723..15851683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27940NANA6+15852050..15854500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27950NANA6+15854843..15857764retrotransposon protein, putative, unclassified
LOC_Os06g27960OsAffx.15635.1.S1_at11/116+15859646..15859909hypothetical protein
LOC_Os06g27970OsAffx.27841.1.S1_s_at10/116+15862236..15871575Wilms' tumor 1-associating protein, putative, expressed
LOC_Os06g27980Os.54059.1.S1_at11/116+15876893..15878566expressed protein
LOC_Os06g27990Os.52447.1.S1_x_at1/116+15881630..15886247retrotransposon, putative, centromere-specific
LOC_Os06g27990OsAffx.25367.1.S1_at1/116+15881630..15886247retrotransposon, putative, centromere-specific
LOC_Os06g28000Os.14208.1.S1_at11/116+15890358..15894672Carboxyl-terminal proteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27841.1.S1_s_at--503--6331Chr06:15867714..15867734 (21 bp)
GATGCAGACAAGGAGATTATTGCTT
LOC_Os06g27970
OsAffx.27841.1.S1_s_at--402--5191Chr06:15867683..15867707 (25 bp)
GCAATCCACGAGGAATTTACACGAT
LOC_Os06g27970
OsAffx.27841.1.S1_s_at--812--4731Chr06:15867132..15867156 (25 bp)
GCTGTCAATTTTACTCCATCCAGTA
LOC_Os06g27970
OsAffx.27841.1.S1_s_at--864--3151Chr06:15866589..15866613 (25 bp)
AATTGCAGTTTTGAAGACTCGGAAC
LOC_Os06g27970
OsAffx.27841.1.S1_s_at--654--1351Chr06:15866575..15866599 (25 bp)
AGACTCGGAACAATGAACTCAGGAA
LOC_Os06g27970
OsAffx.27841.1.S1_s_at--43--3491NONE
CAGGAATCAGTTCAATGAGCTGTAT
NONE
OsAffx.27841.1.S1_s_at--847--2451Chr06:15862957..15862981 (25 bp)
AACACATGGATGGTCTAACAAATGA
LOC_Os06g27970
OsAffx.27841.1.S1_s_at--572--8451Chr06:15862569..15862593 (25 bp)
TGGCCATTCTTCAAGATGAGTTAGA
LOC_Os06g27970
OsAffx.27841.1.S1_s_at--644--6331Chr06:15862511..15862535 (25 bp)
GATGCTTGCCCAGAAAGAAGCAACT
LOC_Os06g27970
OsAffx.27841.1.S1_s_at--26--9731Chr06:15862469..15862493 (25 bp)
TCAAGAAAATGACGTCGCTGGAGAT
LOC_Os06g27970
OsAffx.27841.1.S1_s_at--961--3891Chr06:15862452..15862476 (25 bp)
CTGGAGATGATATAGTTGCTGCCGC
LOC_Os06g27970
Target Sequence 
GATGCAGACAAGGAGATTATTGCTTGATCCAGCAATCCACGAGGAATTTACACGATTAAAGAATCTTGTGGAGGAGAAGG
AGAAAAAGATCAAGGAACTACAGGACAATGTTGCTGCTGTCAATTTTACTCCATCCAGTAAACATGGGAAAATGCTAATG
GCCAAGTGTAGAACATTGCAAGAGGAAAATGAAGAGATTGGGGCGATGGCTTCTGAAGGAAAAATCCATGAACTTGGAAT
GAAAATTGCAGTTTTGAAGACTCGGAACAATGAACTCAGGAATCAGTTCAATGAGCTGTATAAACACATGGATGGTCTAA
CAAATGACGTTGAAAGATCAAATGAAATGGTGGCCATTCTTCAAGATGAGTTAGAAACAAAAGATGTAGAGCTGAGAAGA
TTGAAGGAGATGCTTGCCCAGAAAGAAGCAACTGATGAGAACAAAATACCTCAAGAAAATGACGTCGCTGGAGATGATAT
AGTTGCTGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27841.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis