Browse Element(s) Details


OsAffx.15634.1.S1_at

Description tigr:9634.m02663
TID=OsAffx.15634.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2792011/11Quinone oxidoreductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27900Os.47463.1.S1_x_at5/116+15832176..15836327transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g27900Os.14491.2.S1_x_at4/116+15832176..15836327transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g27910Os.55419.1.S1_at11/116+15839816..15841662Oleosin family protein, expressed
LOC_Os06g27910OsAffx.4948.1.S1_at7/116+15839816..15841662Oleosin family protein, expressed
LOC_Os06g27910OsAffx.20954.1.A1_at1/116+15839816..15841662Oleosin family protein, expressed
LOC_Os06g27920OsAffx.15634.1.S1_at11/116+15847048..15848044Quinone oxidoreductase, putative
LOC_Os06g27920Os.29966.1.S1_at1/116+15847048..15848044Quinone oxidoreductase, putative
LOC_Os06g27920Os.29966.1.S1_x_at1/116+15847048..15848044Quinone oxidoreductase, putative
LOC_Os06g27930NANA6+15848723..15851683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27940NANA6+15852050..15854500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27950NANA6+15854843..15857764retrotransposon protein, putative, unclassified
LOC_Os06g27960OsAffx.15635.1.S1_at11/116+15859646..15859909hypothetical protein
LOC_Os06g27970OsAffx.27841.1.S1_s_at10/116+15862236..15871575Wilms' tumor 1-associating protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15634.1.S1_at--1124--4911Chr06:15847349..15847373 (25 bp)
GCTTGCCTGAGGTGGCCTGCAACAT
LOC_Os06g27920
OsAffx.15634.1.S1_at--1122--6131Chr06:15847357..15847381 (25 bp)
GAGGTGGCCTGCAACATTTGGTCGA
LOC_Os06g27920
OsAffx.15634.1.S1_at--370--7551Chr06:15847360..15847384 (25 bp)
GTGGCCTGCAACATTTGGTCGACTG
LOC_Os06g27920
OsAffx.15634.1.S1_at--207--4271Chr06:15847364..15847388 (25 bp)
CCTGCAACATTTGGTCGACTGCCTG
LOC_Os06g27920
OsAffx.15634.1.S1_at--574--7791Chr06:15847376..15847400 (25 bp)
GGTCGACTGCCTGGCGAATTGTTCT
LOC_Os06g27920
OsAffx.15634.1.S1_at--267--5731Chr06:15847380..15847401 (22 bp)
GACTGCCTGGCGAATTGTTCTCATC
LOC_Os06g27920
OsAffx.15634.1.S1_at--174--9191Chr06:15847383..15847488 (25 bp)
TGCCTGGCGAATTGTTCTCATCCAT
LOC_Os06g27920
OsAffx.15634.1.S1_at--621--8472Chr06:15847387..15847492 (25 bp)
TGGCGAATTGTTCTCATCCATTGTG
LOC_Os06g27920
OsAffx.15634.1.S1_at--453--4592Chr06:15847389..15847494 (25 bp)
GCGAATTGTTCTCATCCATTGTGGA
LOC_Os06g27920
OsAffx.15634.1.S1_at--1001--8792Chr06:15847395..15847500 (25 bp)
TGTTCTCATCCATTGTGGATCGAGT
LOC_Os06g27920
OsAffx.15634.1.S1_at--854--6712Chr06:15847569..15847593 (25 bp)
GTTCAGTAGGACAAAAACAGTACGA
LOC_Os06g27920
Target Sequence 
GCTTGCCTGAGGTGGCCTGCAACATTTGGTCGACTGCCTGGCGAATTGTTCTCATCCATTGTGGATCGAGTGGAATTGGT
ACATTTGCTATACAGATTGCAAAGCAACTTGGAATTAAGGTTTTTGTTACTGCAGGTTTGTTCAGTAGGACAAAAACAGT
ACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis