Browse Element(s) Details

OsAffx.4948.1.S1_at

Description

tigr:9634.m02661
TID=OsAffx.4948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g27910	7/11	Oleosin family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g27890	Os.49380.1.S1_s_at	11/11	6	+	15810010..15820846	NPK2, putative, expressed
LOC_Os06g27890	Os.10319.1.S1_at	1/11	6	+	15810010..15820846	NPK2, putative, expressed
LOC_Os06g27900	Os.47463.1.S1_x_at	5/11	6	+	15832176..15836327	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g27900	Os.14491.2.S1_x_at	4/11	6	+	15832176..15836327	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g27910	Os.55419.1.S1_at	11/11	6	+	15839816..15841662	Oleosin family protein, expressed
LOC_Os06g27910	OsAffx.4948.1.S1_at	7/11	6	+	15839816..15841662	Oleosin family protein, expressed
LOC_Os06g27910	OsAffx.20954.1.A1_at	1/11	6	+	15839816..15841662	Oleosin family protein, expressed
LOC_Os06g27920	OsAffx.15634.1.S1_at	11/11	6	+	15847048..15848044	Quinone oxidoreductase, putative
LOC_Os06g27920	Os.29966.1.S1_at	1/11	6	+	15847048..15848044	Quinone oxidoreductase, putative
LOC_Os06g27920	Os.29966.1.S1_x_at	1/11	6	+	15847048..15848044	Quinone oxidoreductase, putative
LOC_Os06g27930	NA	NA	6	+	15848723..15851683	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27940	NA	NA	6	+	15852050..15854500	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27950	NA	NA	6	+	15854843..15857764	retrotransposon protein, putative, unclassified
LOC_Os06g27960	OsAffx.15635.1.S1_at	11/11	6	+	15859646..15859909	hypothetical protein
LOC_Os06g27970	OsAffx.27841.1.S1_s_at	10/11	6	+	15862236..15871575	Wilms' tumor 1-associating protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0019915	biological_process	sequestering of lipid
GO:0012511	cellular_component	lipid storage body (sensu Viridiplantae)
GO:0016020	cellular_component	membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4948.1.S1_at--1030--455	1	Chr06:15839739..15839763 (25 bp)	GCGCTGAGAGCCGATGGATTCGATC	NONE
OsAffx.4948.1.S1_at--754--81	2	Chr08:22278001..22278023 (23 bp)	ATGGATTCGATCGAACGGTTAGGAT	NONE
OsAffx.4948.1.S1_at--157--53	2	Chr06:15839761..15839782 (22 bp)	ATCGAACGGTTAGGATCGCTCGGCG	NONE
OsAffx.4948.1.S1_at--317--545	1	NONE	GAACGGTTAGGATCGCTCGGCGCCT	NONE
OsAffx.4948.1.S1_at--1079--839	1	Chr06:15840061..15840085 (25 bp)	GGCGCCTCCTCATTACTGATGTTGC	LOC_Os06g27910
OsAffx.4948.1.S1_at--1145--373	1	Chr06:15840154..15840425 (25 bp)	CTCAGAAGACGCGTGTCCCGTGGAT	LOC_Os06g27910
OsAffx.4948.1.S1_at--822--145	1	Chr06:15840157..15840428 (25 bp)	AGAAGACGCGTGTCCCGTGGATCCT	LOC_Os06g27910
OsAffx.4948.1.S1_at--756--871	1	Chr06:15840415..15840438 (24 bp)	TGTCCCGTGGATCCTCCCAGCTAAT	LOC_Os06g27910
OsAffx.4948.1.S1_at--770--417	1	Chr06:15840429..15840453 (25 bp)	CCCAGCTAATTTTATTGAGTCCGAA	LOC_Os06g27910
OsAffx.4948.1.S1_at--526--475	1	Chr06:15840433..15840457 (25 bp)	GCTAATTTTATTGAGTCCGAACCAA	LOC_Os06g27910
OsAffx.4948.1.S1_at--219--1	1	Chr06:15840446..15840470 (25 bp)	AGTCCGAACCAATAGGGAGGCCAAT	LOC_Os06g27910

Target Sequence

GCGCTGAGAGCCGATGGATTCGATCGAACGGTTAGGATCGCTCGGCGCCTCCTCATTACTGATGTTGCCCTCTCCGTCGG
ATCTATACCCTTCTCCGCCGACCTCCCACCCCAGGCGATGGCATCCAGATCAGCTCCTCAGAAGACGCGTGTCCCGTGGA
TCCTCCCAGCTAATTTTATTGAGTCCGAACCAATAGGGAGGCCAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis