Browse Element(s) Details


Os.4939.1.S1_at

Description gb:AK103847.1
DB_XREF= gi:32989056
TID=Os.4939.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033148J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148J24, full insert sequence.
FL= gb:AK103847.1 gb:AK059378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2783011/11WRKY transcription factor 19, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27790Os.24588.1.S1_at11/116+15732747..15736720Selenium-binding protein, putative, expressed
LOC_Os06g27800Os.48168.1.S1_at11/116+15737396..15743796Uncharacterised protein family containing protein, expressed
LOC_Os06g27800Os.48168.1.S2_at10/116+15737396..15743796Uncharacterised protein family containing protein, expressed
LOC_Os06g27810NANA6+15751869..15753320retrotransposon protein, putative, unclassified
LOC_Os06g27820OsAffx.27839.1.S1_at10/116+15753958..15758168hypothetical protein
LOC_Os06g27830Os.4939.1.S1_at11/116+15760135..15764626WRKY transcription factor 19, putative, expressed
LOC_Os06g27840NANA6+15768343..15775360retrotransposon protein, putative, LINE subclass
LOC_Os06g27850Os.53496.1.S1_at11/116+15775961..15777611Peroxidase family protein, expressed
LOC_Os06g27860OsAffx.4947.1.S1_at11/116+15780494..15784810poor homologous synapsis 1 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4939.1.S1_at--957--10471Chr06:15760689..15760713 (25 bp)
TTACTGCATCAAACATGGTGGCGGC
LOC_Os06g27830
Os.4939.1.S1_at--896--3211Chr06:15760656..15760680 (25 bp)
CAAGTTTCAAGGATGTGCCACGAGT
LOC_Os06g27830
Os.4939.1.S1_at--846--10751Chr06:15760589..15760613 (25 bp)
TTGATGAGCGGCAGCAATTCTTCCC
LOC_Os06g27830
Os.4939.1.S1_at--928--3451Chr06:15760488..15760512 (25 bp)
CAGTGACCCCAAATCAGCAGAGAGT
LOC_Os06g27830
Os.4939.1.S1_at--876--9791Chr06:15760455..15760479 (25 bp)
TAAGCATGCTTCCAATGCGGGTCAC
LOC_Os06g27830
Os.4939.1.S1_at--905--2471Chr06:15760426..15760450 (25 bp)
AACAGCCGATCCACTCTATGAAATC
LOC_Os06g27830
Os.4939.1.S1_at--46--4251Chr06:15760397..15760421 (25 bp)
CCGTCTTCTGGGTTAACTGCTTCAA
LOC_Os06g27830
Os.4939.1.S1_at--669--8091Chr06:15760351..15760375 (25 bp)
GGAGCCATGCATTATTTGGACTGTA
LOC_Os06g27830
Os.4939.1.S1_at--606--5731Chr06:15760333..15760357 (25 bp)
GACTGTAGATACCTTGTTGATGCAT
LOC_Os06g27830
Os.4939.1.S1_at--392--6111Chr06:15760306..15760330 (25 bp)
GAGTGGTTTCGCATAGACTTGTTAA
LOC_Os06g27830
Os.4939.1.S1_at--33--9831Chr06:15760219..15760243 (25 bp)
TAACATGCTTTCACTGTCAGTTGAC
LOC_Os06g27830
Target Sequence 
TTACTGCATCAAACATGGTGGCGGCAGGCNGCTGCAAGTTTCAAGGATGTGCCACGAGTGCAAAATGGGGCATGGATTTC
TGCTCTTTGCACAGAAAGAGCTTGATGAGCGGCAGCAATTCTTCCCNATGAAATGCTGCCANGCGCCACCGCCNCAAGCG
CNCGGGCCNAAGAAGACCNAAGACCGCNGGTTGGTCCANTCTGGTCTCTNCCAGTGACCCCAAATCAGCAGAGAGTGTGA
TGATTAAGCATGCTTCCAATGCGGGTCACCAACAACAGCCGATCCACTCTATGAAATCCTCGCCGTCTTCTGGGTTAACT
GCTTCAACTGAGGGTGATGTGGCGGCGAGGAGCCATGCATTATTTGGACTGTAGATACCTTGTTGATGCATAAGAGTGGT
TTCGCATAGACTTGTTAACTAGGGGGATTAGCTGTGAACTGAAGTGAAGATAAGGATCATAGGAGATCCACTTTTTATAT
TAACATGCTTTCACTGTCAGTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis