Browse Element(s) Details


Os.53496.1.S1_at

Description gb:AK072945.1
DB_XREF= gi:32982968
TID=Os.53496.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149C14, full insert sequence.
FL= gb:AK072945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2785011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27810NANA6+15751869..15753320retrotransposon protein, putative, unclassified
LOC_Os06g27820OsAffx.27839.1.S1_at10/116+15753958..15758168hypothetical protein
LOC_Os06g27830Os.4939.1.S1_at11/116+15760135..15764626WRKY transcription factor 19, putative, expressed
LOC_Os06g27840NANA6+15768343..15775360retrotransposon protein, putative, LINE subclass
LOC_Os06g27850Os.53496.1.S1_at11/116+15775961..15777611Peroxidase family protein, expressed
LOC_Os06g27860OsAffx.4947.1.S1_at11/116+15780494..15784810poor homologous synapsis 1 protein, putative, expressed
LOC_Os06g27870Os.12227.1.S1_at1/116+15794378..15796244Signal recognition particle receptor beta subunit, putative
LOC_Os06g27880Os.31535.1.A1_at1/116+15797382..15806061retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53496.1.S1_at--329--8071Chr06:15776888..15776912 (25 bp)
GGAGCAGTCGCCCAAGGTCAGCTTC
LOC_Os06g27850
Os.53496.1.S1_at--1160--2891Chr06:15776901..15776925 (25 bp)
AAGGTCAGCTTCGACGGCCGCACGT
LOC_Os06g27850
Os.53496.1.S1_at--964--9571Chr06:15777034..15777058 (25 bp)
TCTTCGCCGGAGACAACGCCGTGTG
LOC_Os06g27850
Os.53496.1.S1_at--686--2731Chr06:15777138..15777162 (25 bp)
AAGCAATGCCGGCTGGTCAACAAGC
LOC_Os06g27850
Os.53496.1.S1_at--438--9711Chr06:15777154..15777178 (25 bp)
TCAACAAGCCGTCCAAGCAGTCCAA
LOC_Os06g27850
Os.53496.1.S1_at--234--1451Chr06:15777226..15777250 (25 bp)
AGAAGCCTCGCTTGGGCTTGGGCAA
LOC_Os06g27850
Os.53496.1.S1_at--800--4931Chr06:15777241..15777265 (25 bp)
GCTTGGGCAATTTCATCCCTGGCTT
LOC_Os06g27850
Os.53496.1.S1_at--1033--9211Chr06:15777265..15777289 (25 bp)
TCCACGGCTTCTTCTGACAGAGGTG
LOC_Os06g27850
Os.53496.1.S1_at--925--831Chr06:15777337..15777361 (25 bp)
AGGCTCGCTCCTATGGTTTTTCTTT
LOC_Os06g27850
Os.53496.1.S1_at--642--5911Chr06:15777391..15777415 (25 bp)
GAGCTTTTGCTCCTACGGTTACTAC
LOC_Os06g27850
Os.53496.1.S1_at--236--3731Chr06:15777403..15777427 (25 bp)
CTACGGTTACTACTACACTCTGCTG
LOC_Os06g27850
Target Sequence 
GGAGCAGTCGCCCAAGGTCAGCTTCGACGGCCGCACGTCGGAGAAGCTCGACAACGTCTACTACTCCGAGCTGCTGGCCA
GCCGCGGCCTCATGACCTCCGACGACGCGCTCATCAAGGACCCCGAGACCAAGACCACCGTCGATCTCTTCGCCGGAGAC
AACGCCGTGTGGCAGGAGAAGTTCGCCGCCGCGATGCAGAAGCTCGGCGCCGTCGACGTGCTCGTCGGCGAGGGCAAGGG
CCAGATAAGGAAGCAATGCCGGCTGGTCAACAAGCCGTCCAAGCAGTCCAAGCCCACGTCGACGCGGCAGTCCATGCCGG
CGTTGCGGCCAAAGCGCAAGAAGCCTCGCTTGGGCTTGGGCAATTTCATCCCTGGCTTCCACGGCTTCTTCTGACAGAGG
TGAATGAAATTAATTAAGAAAAACAAGTACTACTCCACTTCCCTCCCATAGGCTCGCTCCTATGGTTTTTCTTTTTCTTT
CTTCTTTTTTTTTTTTGAGAGAGGAGCTTTTGCTCCTACGGTTACTACTACACTCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis