Browse Element(s) Details


OsAffx.4947.1.S1_at

Description tigr:9634.m02654
TID=OsAffx.4947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2786011/11poor homologous synapsis 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27820OsAffx.27839.1.S1_at10/116+15753958..15758168hypothetical protein
LOC_Os06g27830Os.4939.1.S1_at11/116+15760135..15764626WRKY transcription factor 19, putative, expressed
LOC_Os06g27840NANA6+15768343..15775360retrotransposon protein, putative, LINE subclass
LOC_Os06g27850Os.53496.1.S1_at11/116+15775961..15777611Peroxidase family protein, expressed
LOC_Os06g27860OsAffx.4947.1.S1_at11/116+15780494..15784810poor homologous synapsis 1 protein, putative, expressed
LOC_Os06g27870Os.12227.1.S1_at1/116+15794378..15796244Signal recognition particle receptor beta subunit, putative
LOC_Os06g27880Os.31535.1.A1_at1/116+15797382..15806061retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4947.1.S1_at--325--151Chr06:15781691..15781715 (25 bp)
ATTACGCCACCATGAGGCACCAGAA
LOC_Os06g27860
OsAffx.4947.1.S1_at--158--2511Chr06:15781636..15781660 (25 bp)
AACATTGATACCGTCTTCTCTGGTT
LOC_Os06g27860
OsAffx.4947.1.S1_at--262--7751Chr06:15781326..15781350 (25 bp)
GGTGTCTATGTTAGATACTTCCCAT
LOC_Os06g27860
OsAffx.4947.1.S1_at--1016--3571Chr06:15781036..15781060 (25 bp)
CATATATATCTGATGGCGCCTTCCA
LOC_Os06g27860
OsAffx.4947.1.S1_at--202--8411Chr06:15780768..15781046 (25 bp)
GGCGCCTTCCATGATATGTTGTTCA
LOC_Os06g27860
OsAffx.4947.1.S1_at--519--2571Chr06:15780722..15780746 (25 bp)
AACTGGGTGGCGACTTGTCACTGTA
LOC_Os06g27860
OsAffx.4947.1.S1_at--786--551Chr06:15780688..15780712 (25 bp)
ATCCTCTGTGGTGGGAAGGCCTTTA
LOC_Os06g27860
OsAffx.4947.1.S1_at--36--6951Chr06:15780633..15780657 (25 bp)
GTAGTTCACTTACTATCCCTTGCAG
LOC_Os06g27860
OsAffx.4947.1.S1_at--531--4891Chr06:15780609..15780633 (25 bp)
GCTTTTGCTCCTACAGAATTTTGTC
LOC_Os06g27860
OsAffx.4947.1.S1_at--46--171Chr06:15780592..15780616 (25 bp)
ATTTTGTCCAGTAAAGCTTCCATCA
LOC_Os06g27860
OsAffx.4947.1.S1_at--494--3551Chr06:15780527..15780551 (25 bp)
CATCTGAGGACTATCTTGTGTGAAA
LOC_Os06g27860
Target Sequence 
ATTACGCCACCATGAGGCACCAGAAGAGCCTCTTCTTCAACCTCTCCTTGCTACCAACATTGATACCGTCTTCTCTGGTT
TCCCCCCCAGTTTCACTGATATGCTGACACAATTTTCATGTAAAACTGAGAAAGATGCTGAGGAACCATATCCAGTAACT
GCAACGGACCATGCACCACAAGAGGTGTCTATGTTAGATACTTCCCATAATGTTGCAATTTCCACAACTTCTGCTAACGA
AATTGATGTTAATAGAGAAACAAGTGATATTATGACAAGGATAAAGACATATATATCTGATGGCGCCTTCCATGATATGT
TGTTCAAGCTCGAGAGAGTTATTGATGAACTGGGTGGCGACTTGTCACTGTAGATAGTAACATCCTCTGTGGTGGGAAGG
CCTTTATTTGCCTATGATCTTATATGCATTGAAGTCGTAGTTCACTTACTATCCCTTGCAGCTTTTGCTCCTACAGAATT
TTGTCCAGTAAAGCTTCCATCAAGATGAGAAGTTTATCTTGTCTCTAACATATTGCGTAGTACATCTGAGGACTATCTTG
TGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis