Browse Element(s) Details


Os.49397.1.S1_at

Description gb:AK068979.1
DB_XREF= gi:32979003
TID=Os.49397.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003J09, full insert sequence.
FL= gb:AK068979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1445011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14400NANA4+8042155..8044227retrotransposon protein, putative, unclassified
LOC_Os04g14410Os.54205.1.A1_at10/114+8044491..8052126expressed protein
LOC_Os04g14410OsAffx.22306.1.S1_at1/114+8044491..8052126expressed protein
LOC_Os04g14420NANA4+8057599..8059204hypothetical protein
LOC_Os04g14430NANA4+8059922..8062431retrotransposon protein, putative, unclassified
LOC_Os04g14450Os.49397.1.S1_x_at11/114+8065682..8070554pentatricopeptide, putative, expressed
LOC_Os04g14450Os.49397.1.S1_at11/114+8065682..8070554pentatricopeptide, putative, expressed
LOC_Os04g14460NANA4+8075004..8076365hypothetical protein
LOC_Os04g14470Os.52238.1.S1_at2/114+8077818..8078825retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14480OsAffx.26035.1.S1_at11/114+8081059..8081946hypothetical protein
LOC_Os04g14490NANA4+8082426..8085910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14500NANA4+8090081..8092337hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49397.1.S1_at--215--351Chr04:8065974..8065998 (25 bp)
ATAAAGGTGTGTGGCTATGCTCCGA
LOC_Os04g14450
Os.49397.1.S1_at--947--8651Chr04:8065967..8065991 (25 bp)
TGTGTGGCTATGCTCCGAAGGTTAA
LOC_Os04g14450
Os.49397.1.S1_at--437--8491Chr04:8065963..8065987 (25 bp)
TGGCTATGCTCCGAAGGTTAACAAT
LOC_Os04g14450
Os.49397.1.S1_at--954--4771Chr04:8065956..8065980 (25 bp)
GCTCCGAAGGTTAACAATGCTTCTG
LOC_Os04g14450
Os.49397.1.S1_at--1023--3011Chr04:8065941..8065965 (25 bp)
AATGCTTCTGTTGATTTGTGCAAGG
LOC_Os04g14450
Os.49397.1.S1_at--530--4911Chr04:8065938..8065962 (25 bp)
GCTTCTGTTGATTTGTGCAAGGAAA
LOC_Os04g14450
Os.49397.1.S1_at--565--3431Chr04:8065848..8065872 (25 bp)
CAGTTGAGAGAGTTTTGCTTGAACA
LOC_Os04g14450
Os.49397.1.S1_at--761--6011Chr04:8065841..8065865 (25 bp)
GAGAGTTTTGCTTGAACATTGTATA
LOC_Os04g14450
Os.49397.1.S1_at--102--1251Chr04:8065760..8065784 (25 bp)
AGTTGTATATTATTCTTCCGTTAAG
LOC_Os04g14450
Os.49397.1.S1_at--103--1252Chr07:20738694..20739114 (25 bp)
AGTTGTGTATTATTCTTCTTGTTTT
NONE
Os.49397.1.S1_at--572--3651Chr04:8065699..8065723 (25 bp)
CTTCTTGTTTTATGCAATTTATATG
LOC_Os04g14450
Target Sequence 
ATAAAGGTGTGTGGCTATGCTCCGAAGGTTAACAATGCTTCTGTTGATTTGTGCAAGGAAAATATCAGAGAAGCTGTCTG
GTGTCTACTGTTCATTGGGAAGCTTGCCCCTTTCATTTAGGATGGTCAGTTGAGAGAGTTTTGCTTGAACATTGTATAGA
ATAGAAGGGAGTTTTTGAGGGCTGAGATTCTTCCGTGAAGTCTGTGGAATTTTTAGTTGTATATTATTCTTCCGTTAAGT
TTTCTTGTTTATGGATATTATAGTTGTGTATTATTCTTCTTGTTTTATGCAATTTATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis