Browse Element(s) Details


Os.49472.1.S1_at

Description gb:AK067888.1
DB_XREF= gi:32977906
TID=Os.49472.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49472 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126H20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126H20, full insert sequence.
FL= gb:AK067888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0503011/11Serine-rich 25 kDa antigen protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04990NANA4+2403567..2407056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g04999NANA4+2410429..2410965hypothetical protein
LOC_Os04g05010Os.8922.1.S1_at10/114+2413872..2416640CBS domain containing protein, expressed
LOC_Os04g05020Os.40360.1.S1_at9/114+2422672..2424647hypothetical protein
LOC_Os04g05020Os.40360.1.S1_x_at7/114+2422672..2424647hypothetical protein
LOC_Os04g05030Os.49472.1.S1_at11/114+2428660..2434924Serine-rich 25 kDa antigen protein, putative, expressed
LOC_Os04g05030Os.6242.1.S1_s_at1/114+2428660..2434924Serine-rich 25 kDa antigen protein, putative, expressed
LOC_Os04g05040OsAffx.13097.1.S1_s_at11/114+2435987..2438160Transposable element protein, putative, MuDR

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49472.1.S1_at--719--2411Chr04:2433512..2433536 (25 bp)
AAAAATGAGCCTCCTGTAGCTCCTG
LOC_Os04g05030
Os.49472.1.S1_at--58--10011Chr04:2433528..2433552 (25 bp)
TAGCTCCTGGTACTACCGTTCAAGA
LOC_Os04g05030
Os.49472.1.S1_at--966--5891Chr04:2433619..2433643 (25 bp)
GAGCTGTGATCGGTCAACTCAGGAG
LOC_Os04g05030
Os.49472.1.S1_at--1135--251Chr04:2433648..2433752 (25 bp)
ATATGCGAATGCTTAGGTCCCTCTC
LOC_Os04g05030
Os.49472.1.S1_at--1120--3771Chr04:2433750..2433774 (25 bp)
CTCGGCGGCTGATCGAAGCATGCAT
LOC_Os04g05030
Os.49472.1.S1_at--538--10531Chr04:2434605..2434629 (25 bp)
TTCGCCAAACGGTCCTTCAAAACAG
LOC_Os04g05030
Os.49472.1.S1_at--954--2411Chr04:2434623..2434647 (25 bp)
AAAACAGGCCCCTTTGTAGCGACAG
LOC_Os04g05030
Os.49472.1.S1_at--1083--1551Chr04:2434681..2434705 (25 bp)
AGCTGAAATGTTCCAGGTCCATCGC
LOC_Os04g05030
Os.49472.1.S1_at--1116--9891Chr04:2434722..2434746 (25 bp)
TACTCATGTAGCTCCATTTTTCCTT
LOC_Os04g05030
Os.49472.1.S1_at--1085--9231Chr04:2434752..2434776 (25 bp)
TCCTTTGCCATGTAACTCATTTTCC
LOC_Os04g05030
Os.49472.1.S1_at--78--5691Chr04:2434806..2434830 (25 bp)
GACTTACCAACCTCATGTGCTGTGA
LOC_Os04g05030
Target Sequence 
AAAAATGAGCCTCCTGTAGCTCCTGGTACTACCGTTCAAGATGATACCCATAAGTCAAGCAATCAATACTGGAATGCGAG
ATTTAATCGGTTACAGACATATTTGGAGAGCTGTGATCGGTCAACTCAGGAGGGTTATATGCGAATGCTTAGGTCCCTCT
CGGCGGCTGATCGAAGCATGCATGCAATTGATCTGGAGAAAAGGGCAATTCACTTATTAGTGGAGGAAGGGAAAGAGCTG
CANCGGATGAAGGCTTTGAATGTTCTGGGAAAAGTTTCGCCAAACGGTCCTTCAAAACAGGCCCCTTTGTAGCGACAGGA
CCAAGAACGAGATGGATGGTGTAATTCGAAGAGCTGAAATGTTCCAGGTCCATCGCAGCAAAGACTATGGTCTACTCATG
TAGCTCCATTTTTCCTTGGGCCTCCTTTGCCATGTAACTCATTTTCCTTCATTTCTTTCTGCTTTTACCTCTCGACGACT
TACCAACCTCATGTGCTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis