Browse Element(s) Details


Os.8922.1.S1_at

Description gb:AK066843.1
DB_XREF= gi:32976861
TID=Os.8922.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013082B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013082B01, full insert sequence.
FL= gb:AK066843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0501010/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04959NANA4+2391271..2391731NA
LOC_Os04g04970OsAffx.3725.1.S1_at9/114+2395160..2396190hypothetical protein
LOC_Os04g04980OsAffx.13673.1.S1_x_at11/114+2400936..2402175Pyridoxal-dependent decarboxylase, C-terminal sheet domain containing protein
LOC_Os04g04990NANA4+2403567..2407056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g04999NANA4+2410429..2410965hypothetical protein
LOC_Os04g05010Os.8922.1.S1_at10/114+2413872..2416640CBS domain containing protein, expressed
LOC_Os04g05020Os.40360.1.S1_at9/114+2422672..2424647hypothetical protein
LOC_Os04g05020Os.40360.1.S1_x_at7/114+2422672..2424647hypothetical protein
LOC_Os04g05030Os.49472.1.S1_at11/114+2428660..2434924Serine-rich 25 kDa antigen protein, putative, expressed
LOC_Os04g05030Os.6242.1.S1_s_at1/114+2428660..2434924Serine-rich 25 kDa antigen protein, putative, expressed
LOC_Os04g05040OsAffx.13097.1.S1_s_at11/114+2435987..2438160Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8922.1.S1_at--8--3211Chr04:2416006..2416027 (22 bp)
CAAGGCCAAGGCATCCAATGGGTTG
LOC_Os04g05010
Os.8922.1.S1_at--1125--3831Chr04:2415066..2415090 (25 bp)
CTGCTATAACTCTGACACCCGAGAA
LOC_Os04g05010
Os.8922.1.S1_at--613--2691Chr04:2414927..2414951 (25 bp)
AAGCTGCTGCTCTTATGCTCAAGGA
LOC_Os04g05010
Os.8922.1.S1_at--422--5311Chr04:2414902..2414926 (25 bp)
GAAGGTTCACAGGATACCAGTCGTG
LOC_Os04g05010
Os.8922.1.S1_at--968--2851NONE
AAGTGATCGGGATCGTCACTCGCAC
NONE
Os.8922.1.S1_at--686--1991Chr04:2414345..2414369 (25 bp)
ACTCGCACGGACGTATTCAAGGCTT
LOC_Os04g05010
Os.8922.1.S1_at--409--631Chr04:2414266..2414290 (25 bp)
ATGCTCCTTGTGTAGATATCGATGC
LOC_Os04g05010
Os.8922.1.S1_at--668--251Chr04:2414251..2414275 (25 bp)
ATATCGATGCCTTCGTAGGCTGTCG
LOC_Os04g05010
Os.8922.1.S1_at--643--7571Chr04:2414226..2414250 (25 bp)
GGGCGTTGCTCTTGTACATTAATTC
LOC_Os04g05010
Os.8922.1.S1_at--50--7331Chr04:2414183..2414207 (25 bp)
GTGCTCAAGCCTTTCTATGTACTAC
LOC_Os04g05010
Os.8922.1.S1_at--652--8671Chr04:2414114..2414138 (25 bp)
TGTGATCTTCGTTAGTTGGTTGCTG
LOC_Os04g05010
Target Sequence 
CAAGGCCAAGGCATCCAATGGGTTGGACTCAACTGTTGGAGAAGTCATGTCATCTCCTGCTATAACTCTGACACCCGAGA
AGACTGTATTGGAAGCTGCTGCTCTTATGCTCAAGGAGAAGGTTCACAGGATACCAGTCGTGAATGAACAACAGCAAGTG
ATCGGGATCGTCACTCGCACGGACGTATTCAAGGCTTTGGAGGCCAGCAAGGTGTAGTAAGATCCCAGTTAATAATAATC
AGTAAATAAACATGCTCCTTGTGTAGATATCGATGCCTTCGTAGGCTGTCGGGGCGTTGCTCTTGTACATTAATTCTAGC
TGTAAAATCTGGAAGTGCTCAAGCCTTTCTATGTACTACTCATGTGTCATGTTTCTGAACAAGTACCTTAGGGTGCTGGG
GTTTGTGATCTTCGTTAGTTGGTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis