Browse Element(s) Details


Os.49501.1.A1_at

Description gb:AK064240.1
DB_XREF= gi:32974258
TID=Os.49501.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-B01, full insert sequence.
FL= gb:AK064240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1223011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12210Os.53254.1.S1_at1/116+6555803..6556320bHLH family protein, putative, expressed
LOC_Os06g12220Os.7811.1.S1_at11/116+6558755..6562367HVA22-like protein a, putative, expressed
LOC_Os06g12230Os.49501.1.A1_at11/116+6570019..6571670TCP family transcription factor containing protein, expressed
LOC_Os06g12240OsAffx.15381.1.S1_at9/116+6583406..6584966hypothetical protein
LOC_Os06g12250Os.5511.1.S1_s_at11/116+6588824..6590792Protein SUR2, putative, expressed
LOC_Os06g12260Os.17863.1.S1_at11/116+6594965..6601477expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49501.1.A1_at--970--7271Chr06:6571194..6571218 (25 bp)
GTGCCAAGCGGACTACATTTCATGA
LOC_Os06g12230
Os.49501.1.A1_at--771--10311Chr06:6571211..6571235 (25 bp)
TTTCATGAACTTCCCGGCGACACCA
LOC_Os06g12230
Os.49501.1.A1_at--1107--2931Chr06:6571384..6571408 (25 bp)
AAGGCTCAAGTCAGCATCGTCAGCA
LOC_Os06g12230
Os.49501.1.A1_at--891--3511Chr06:6571449..6571473 (25 bp)
CATGAGAGCATGAGCGCCAGCGACT
LOC_Os06g12230
Os.49501.1.A1_at--573--10031Chr06:6571476..6571500 (25 bp)
TAGGGCTTCCGTTCCGTCCGGTGTG
LOC_Os06g12230
Os.49501.1.A1_at--215--9171Chr06:6571501..6571525 (25 bp)
TGCCCCGCATTTTCTCTGGTTTTGA
LOC_Os06g12230
Os.49501.1.A1_at--392--3771Chr06:6571514..6571538 (25 bp)
CTCTGGTTTTGATCTGTTCTTCTTT
LOC_Os06g12230
Os.49501.1.A1_at--161--9291Chr06:6571546..6571570 (25 bp)
TCCGTTTTTGTTTGAGTTGTTGTCT
LOC_Os06g12230
Os.49501.1.A1_at--481--6651Chr06:6571561..6571585 (25 bp)
GTTGTTGTCTACTAATGTCTATGGC
LOC_Os06g12230
Os.49501.1.A1_at--921--2011Chr06:6571571..6571595 (25 bp)
ACTAATGTCTATGGCTTTCTTCCTC
LOC_Os06g12230
Os.49501.1.A1_at--589--10671Chr06:6571590..6571614 (25 bp)
TTCCTCGACCCATCATATATTCATG
LOC_Os06g12230
Target Sequence 
GTGCCAAGCGGACTACATTTCATGAACTTCCCGGCGACACCAATGGCGCTGCTCCCCGGCGGGCANCAGCTCGGCCTCGC
CGGCGCCGGCGGGGGTGGCGAGGGNCACCCGGGGATCCTCGCCGCGCTCAATGCCTACCGCGCACAGGCCGCGCAGCCGG
ACGCCGGCGCGGCGGCGCAGAATGGAGCGCAAGGCTCAAGTCAGCATCGTCAGCATCAGCATCACGGCGGCGGCGGCGGC
GGCGGCGACGAGCGGCATGAGAGCATGAGCGCCAGCGACTCGTAGGGCTTCCGTTCCGTCCGGTGTGTGCCCCGCATTTT
CTCTGGTTTTGATCTGTTCTTCTTTAATTTTCTCCGTTTTTGTTTGAGTTGTTGTCTACTAATGTCTATGGCTTTCTTCC
TCGACCCATCATATATTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49501.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis