Browse Element(s) Details


OsAffx.15381.1.S1_at

Description tigr:9634.m01202
TID=OsAffx.15381.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g122409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12220Os.7811.1.S1_at11/116+6558755..6562367HVA22-like protein a, putative, expressed
LOC_Os06g12230Os.49501.1.A1_at11/116+6570019..6571670TCP family transcription factor containing protein, expressed
LOC_Os06g12240OsAffx.15381.1.S1_at9/116+6583406..6584966hypothetical protein
LOC_Os06g12250Os.5511.1.S1_s_at11/116+6588824..6590792Protein SUR2, putative, expressed
LOC_Os06g12260Os.17863.1.S1_at11/116+6594965..6601477expressed protein
LOC_Os06g12270OsAffx.15382.1.S1_at10/116+6602976..6603636hypothetical protein
LOC_Os06g12280OsAffx.15383.1.S1_at11/116+6604851..6607425Glycosyl transferase family 8 protein, expressed
LOC_Os06g12280Os.11704.1.S1_at1/116+6604851..6607425Glycosyl transferase family 8 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15381.1.S1_at--67--4051Chr06:6583437..6583461 (25 bp)
CGTTGTCATATCTACTGCGGTGTCT
LOC_Os06g12240
OsAffx.15381.1.S1_at--469--8731Chr06:6583440..6583464 (25 bp)
TGTCATATCTACTGCGGTGTCTTGC
LOC_Os06g12240
OsAffx.15381.1.S1_at--1037--10151Chr06:6583445..6583469 (25 bp)
TATCTACTGCGGTGTCTTGCGAGAA
LOC_Os06g12240
OsAffx.15381.1.S1_at--611--9911Chr06:6583449..6583473 (25 bp)
TACTGCGGTGTCTTGCGAGAAAGCC
LOC_Os06g12240
OsAffx.15381.1.S1_at--198--4591NONE
GCGAGAAAGCCGAACAAGGGACTAA
NONE
OsAffx.15381.1.S1_at--483--11Chr06:6584225..6584249 (25 bp)
ATGAGGTATTTCACGTAAAACGAAG
LOC_Os06g12240
OsAffx.15381.1.S1_at--276--11NONE
CGTAAAACGAAGTGCAGAAACAAAT
NONE
OsAffx.15381.1.S1_at--810--5311Chr06:6584838..6584862 (25 bp)
GAAGGGATAAAGCTCTCTAGCCTAA
LOC_Os06g12240
OsAffx.15381.1.S1_at--671--6471Chr06:6584843..6584867 (25 bp)
GATAAAGCTCTCTAGCCTAAGCGAT
LOC_Os06g12240
OsAffx.15381.1.S1_at--757--4811Chr06:6584849..6584873 (25 bp)
GCTCTCTAGCCTAAGCGATATCGAT
LOC_Os06g12240
OsAffx.15381.1.S1_at--895--4451Chr06:6584857..6584881 (25 bp)
GCCTAAGCGATATCGATCAAGAGGT
LOC_Os06g12240
Target Sequence 
CGTTGTCATATCTACTGCGGTGTCTTGCGAGAAAGCCGAACAAGGGACTAAAAGAGATTAATGTGGTGTTTGAATCTCCT
GAAGATGAAGATGAAAATGAGGTATTTCACGTAAAACGAAGTGCAGAAACAAATGAAGGGATAAAGCTCTCTAGCCTAAG
CGATATCGATCAAGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis