Browse Element(s) Details


OsAffx.15383.1.S1_at

Description tigr:9634.m01207
TID=OsAffx.15383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1228011/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12240OsAffx.15381.1.S1_at9/116+6583406..6584966hypothetical protein
LOC_Os06g12250Os.5511.1.S1_s_at11/116+6588824..6590792Protein SUR2, putative, expressed
LOC_Os06g12260Os.17863.1.S1_at11/116+6594965..6601477expressed protein
LOC_Os06g12270OsAffx.15382.1.S1_at10/116+6602976..6603636hypothetical protein
LOC_Os06g12280OsAffx.15383.1.S1_at11/116+6604851..6607425Glycosyl transferase family 8 protein, expressed
LOC_Os06g12280Os.11704.1.S1_at1/116+6604851..6607425Glycosyl transferase family 8 protein, expressed
LOC_Os06g12290OsAffx.15384.1.S1_at11/116+6611662..6612441Glutathione S-transferase, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15383.1.S1_at--390--2911Chr06:6606399..6606423 (25 bp)
AAGGATTTGGCTGGGCTCTGGCATC
LOC_Os06g12280
OsAffx.15383.1.S1_at--825--2971Chr06:6606354..6606378 (25 bp)
AATGGTGCCGTCGAGATGTGCTTCG
LOC_Os06g12280
OsAffx.15383.1.S1_at--924--5171Chr06:6606311..6606335 (25 bp)
GCAAGTATCTCAACTTCACGCAGGC
LOC_Os06g12280
OsAffx.15383.1.S1_at--54--571Chr06:6606266..6606290 (25 bp)
ATCCTGGCGCATGTGCTTGGGCATA
LOC_Os06g12280
OsAffx.15383.1.S1_at--985--4751Chr06:6606200..6606224 (25 bp)
GCTGCACGGAGCTGTTCCATCAGTA
LOC_Os06g12280
OsAffx.15383.1.S1_at--98--9971Chr06:6605068..6605092 (25 bp)
TACCTGCTGGGCTGATGACATTCTA
LOC_Os06g12280
OsAffx.15383.1.S1_at--713--6891Chr06:6604995..6605019 (25 bp)
GTATAATCCAAGCATCAGTCCTGAG
LOC_Os06g12280
OsAffx.15383.1.S1_at--881--1131Chr06:6604979..6605003 (25 bp)
AGTCCTGAGGTTATCGCTGGTGCTG
LOC_Os06g12280
OsAffx.15383.1.S1_at--200--4731Chr06:6604964..6604988 (25 bp)
GCTGGTGCTGCTGTGATACATTTTA
LOC_Os06g12280
OsAffx.15383.1.S1_at--858--2371Chr06:6604928..6604952 (25 bp)
AAACCGTGGCTTGATGTTGCGTTGA
LOC_Os06g12280
OsAffx.15383.1.S1_at--585--7031Chr06:6604899..6604923 (25 bp)
GTACAAAGCTCTCTGGACCAAGTAT
LOC_Os06g12280
Target Sequence 
AAGGATTTGGCTGGGCTCTGGCATCTCGACTTGGATGGGAAGGTGAATGGTGCCGTCGAGATGTGCTTCGGTGGATTCAG
GAGATATAGCAAGTATCTCAACTTCACGCAGGCCATCGTGCAGGAGCGGTTCGATCCTGGCGCATGTGCTTGGGCATATG
GGGTCAATGTGTATGATCTTGAGGCATGGCGAAGGGATGGCTGCACGGAGCTGTTCCATCAGTACATGGAAATGAATGAG
GATGGTGTGCTTTGGGATCCCACATCTGTTCTACCTGCTGGGCTGATGACATTCTATGGCAATACAAAGCCGCTTGACAA
ATCATGGCATGTAATGGGCCTTGGGTATAATCCAAGCATCAGTCCTGAGGTTATCGCTGGTGCTGCTGTGATACATTTTA
ATGGGAATATGAAACCGTGGCTTGATGTTGCGTTGAACCAGTACAAAGCTCTCTGGACCAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis