Browse Element(s) Details


OsAffx.15384.1.S1_at

Description tigr:9634.m01208
TID=OsAffx.15384.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutathione S-transferase, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1229011/11Glutathione S-transferase, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12250Os.5511.1.S1_s_at11/116+6588824..6590792Protein SUR2, putative, expressed
LOC_Os06g12260Os.17863.1.S1_at11/116+6594965..6601477expressed protein
LOC_Os06g12270OsAffx.15382.1.S1_at10/116+6602976..6603636hypothetical protein
LOC_Os06g12280OsAffx.15383.1.S1_at11/116+6604851..6607425Glycosyl transferase family 8 protein, expressed
LOC_Os06g12280Os.11704.1.S1_at1/116+6604851..6607425Glycosyl transferase family 8 protein, expressed
LOC_Os06g12290OsAffx.15384.1.S1_at11/116+6611662..6612441Glutathione S-transferase, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15384.1.S1_at--943--1871Chr06:6611948..6611972 (25 bp)
ACGAGGTGTGGCCACAGGCGCCGCG
LOC_Os06g12290
OsAffx.15384.1.S1_at--598--851Chr06:6612130..6612154 (25 bp)
ATGGCCGTGATGGAGGCCGGGTTTG
LOC_Os06g12290
OsAffx.15384.1.S1_at--822--10731Chr06:6612152..6612176 (25 bp)
TTGAGAGGGACTTCCCGTCGTCGGT
LOC_Os06g12290
OsAffx.15384.1.S1_at--1068--8311Chr06:6612212..6612236 (25 bp)
GGCTGCTCGACGTGATACTGGGCTC
LOC_Os06g12290
OsAffx.15384.1.S1_at--802--9091Chr06:6612215..6612239 (25 bp)
TGCTCGACGTGATACTGGGCTCCTG
LOC_Os06g12290
OsAffx.15384.1.S1_at--1073--9351Chr06:6612218..6612242 (25 bp)
TCGACGTGATACTGGGCTCCTGCGC
LOC_Os06g12290
OsAffx.15384.1.S1_at--180--7631Chr06:6612247..6612271 (25 bp)
GGGACGAGGGCGATCTCCGCCATGG
LOC_Os06g12290
OsAffx.15384.1.S1_at--899--9031Chr06:6612311..6612335 (25 bp)
TGCACGCCAGCATGGCCGCGTTCGA
LOC_Os06g12290
OsAffx.15384.1.S1_at--447--871Chr06:6612322..6612346 (25 bp)
ATGGCCGCGTTCGACGAGCGCGTCG
LOC_Os06g12290
OsAffx.15384.1.S1_at--796--5871Chr06:6612337..6612361 (25 bp)
GAGCGCGTCGCAGGGTTCGGGACCA
LOC_Os06g12290
OsAffx.15384.1.S1_at--615--9431Chr06:6612353..6612377 (25 bp)
TCGGGACCAGCGTGCCGCACGAGCT
LOC_Os06g12290
Target Sequence 
ACGAGGTGTGGCCACAGGCGCCGCGGCTGCTTCCGCCGCCGTCGTCCCCGCGCGCTCGCGCCGCGGCCAGGTTCTGGGCG
AGGTTCTTCCACGGCGAGGTGTCGCCGCTGTCGCGCGCGGCGGCGGTGCTCGCGCCGACGCCGGAGGAGCGGGCGGAGGC
GGTGCGGGAGATGAAGGCGCGGATGGCCGTGATGGAGGCCGGGTTTGAGAGGGACTTCCCGTCGTCGGTCGTCGGCGGCC
CGTTCGTGCACGGCGCGACGCCGGGGCTGCTCGACGTGATACTGGGCTCCTGCGCCGCCGGGACGAGGGCGATCTCCGCC
ATGGCCGGCGAGGAGGTCGTGGAGCCGGACGCGCTGCCGCACGTGCACGCCAGCATGGCCGCGTTCGACGAGCGCGTCGC
AGGGTTCGGGACCAGCGTGCCGCACGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis