Browse Element(s) Details


Os.17863.1.S1_at

Description gb:AK066970.1
DB_XREF= gi:32976988
TID=Os.17863.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17863 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089B21, full insert sequence.
FL= gb:AK066970.1 gb:AK104849.1 gb:AK073517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1226011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12230Os.49501.1.A1_at11/116+6570019..6571670TCP family transcription factor containing protein, expressed
LOC_Os06g12240OsAffx.15381.1.S1_at9/116+6583406..6584966hypothetical protein
LOC_Os06g12250Os.5511.1.S1_s_at11/116+6588824..6590792Protein SUR2, putative, expressed
LOC_Os06g12260Os.17863.1.S1_at11/116+6594965..6601477expressed protein
LOC_Os06g12270OsAffx.15382.1.S1_at10/116+6602976..6603636hypothetical protein
LOC_Os06g12280OsAffx.15383.1.S1_at11/116+6604851..6607425Glycosyl transferase family 8 protein, expressed
LOC_Os06g12280Os.11704.1.S1_at1/116+6604851..6607425Glycosyl transferase family 8 protein, expressed
LOC_Os06g12290OsAffx.15384.1.S1_at11/116+6611662..6612441Glutathione S-transferase, N-terminal domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17863.1.S1_at--1153--491Chr06:6595538..6595562 (25 bp)
ATCGGTGCCATTTAGAAGTTGTCCA
LOC_Os06g12260
Os.17863.1.S1_at--475--8551Chr06:6595499..6595523 (25 bp)
TGGATGGTTGTCACAGTTCCTGTCA
LOC_Os06g12260
Os.17863.1.S1_at--27--10671Chr06:6595483..6595507 (25 bp)
TTCCTGTCACTGTGGTTTGCTTTAC
LOC_Os06g12260
Os.17863.1.S1_at--1084--9951Chr06:6595461..6595485 (25 bp)
TACCTGTATTTTCTGTCCTCGTTGA
LOC_Os06g12260
Os.17863.1.S1_at--579--8851Chr06:6595439..6595463 (25 bp)
TGATCTGCTCCCTGCACAAATGATG
LOC_Os06g12260
Os.17863.1.S1_at--528--2191Chr06:6595424..6595448 (25 bp)
ACAAATGATGTCCTGGTCCAACCTT
LOC_Os06g12260
Os.17863.1.S1_at--786--1731Chr06:6595404..6595428 (25 bp)
ACCTTGTTCACCCATGCTGTTGAAT
LOC_Os06g12260
Os.17863.1.S1_at--1099--2691Chr06:6595350..6595374 (25 bp)
AAGCTCATCTTTTTGTTTGCGTGTT
LOC_Os06g12260
Os.17863.1.S1_at--530--2191Chr06:6595152..6595176 (25 bp)
ACAAATATTGTCCTCCTGATTCCAA
LOC_Os06g12260
Os.17863.1.S1_at--221--91Chr06:6595134..6595158 (25 bp)
ATTCCAATCTGATTTCATCCCTATC
LOC_Os06g12260
Os.17863.1.S1_at--487--151Chr06:6594989..6595013 (25 bp)
ATTATAACCCTTGCTAATTCGCTGG
LOC_Os06g12260
Target Sequence 
ATCGGTGCCATTTAGAAGTTGTCCAAACCTTAGGAAACCTGGATGGTTGTCACAGTTCCTGTCACTGTGGTTTGCTTTAC
CTGTATTTTCTGTCCTCGTTGATCTGCTCCCTGCACAAATGATGTCCTGGTCCAACCTTGTTCACCCATGCTGTTGAATT
GTGCTGCAAAGTTATATCCATGAATCTTAAGCTCATCTTTTTGTTTGCGTGTTGCCGCATTCTTTTGGCCTTGGCATTCC
GCCAAGGCAACAAGGCTCAAGTAGGGCTATGAGGCTGGGTGGTTTCGTTTGTGTTCTTTGAACCTTGGATGATTATAAAC
TCTTGATCCAAGACTAGGGATGAAAGTGTATTGGATAGTGTATATAATACAAACCCAGGATCTGGTACAAATATTGTCCT
CCTGATTCCAATCTGATTTCATCCCTATCCAAGAAGAAGGCTATATATGTGATATCCTTGGGCTGATTGCATCATGAAAG
CTGAGAATTTTTTNTNGAGTTCTCAATCGCATTNTTGTGGAAGGTGATGCATTTTNCCTTCCTATAAATATTATAACCCT
TGCTAATTCGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis