Browse Element(s) Details


Os.49542.1.S1_at

Description gb:AK120020.1
DB_XREF= gi:37989643
TID=Os.49542.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-186-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C02, full insert sequence.
FL= gb:AK120020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g105001/11V-type ATPase 116kDa subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10480Os.46714.1.S1_at11/1110+5525792..5533426expressed protein
LOC_Os10g10480Os.16112.1.S1_s_at1/1110+5525792..5533426expressed protein
LOC_Os10g10490OsAffx.8414.1.S1_at11/1110+5537020..5538433retrotransposon protein, putative, unclassified
LOC_Os10g10500Os.28056.1.S1_at11/1110+5546932..5555416V-type ATPase 116kDa subunit family protein, expressed
LOC_Os10g10500Os.49542.1.S1_at1/1110+5546932..5555416V-type ATPase 116kDa subunit family protein, expressed
LOC_Os10g10510OsAffx.18204.1.S1_at11/1110+5560629..5561988hypothetical protein
LOC_Os10g10510Os.6227.2.S1_x_at1/1110+5560629..5561988hypothetical protein
LOC_Os10g10520NANA10+5566285..5569075Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49542.1.S1_at--1161--5491Chr02:5776176..5776200 (25 bp)
GAACAGCCGGAACCCTTCGTCGTAG
NONE
Os.49542.1.S1_at--89--9271Chr02:5776142..5776166 (25 bp)
TACGGGACGTAGGAGATCCCGCCGC
NONE
Os.49542.1.S1_at--523--2491Chr02:5776067..5776091 (25 bp)
AACATGCGCCGGTGCGCCGACACGG
NONE
Os.49542.1.S1_at--717--7671Chr02:5775913..5775937 (25 bp)
GGGTAGCTTGTGTTCGCGACAAAGA
NONE
Os.49542.1.S1_at--873--8671Chr02:5775905..5775929 (25 bp)
TGTGTTCGCGACAAAGACAAGCTTT
NONE
Os.49542.1.S1_at--692--7751Chr02:5775879..5775903 (25 bp)
GGTGTTGAGAGATGTAGCCTGCATT
NONE
Os.49542.1.S1_at--678--1671Chr02:5775864..5775888 (25 bp)
AGCCTGCATTGCCTGCCAGTATATA
NONE
Os.49542.1.S1_at--827--271Chr02:5775842..5775866 (25 bp)
ATATGGCTGTTCTTTTACACCTAAG
NONE
Os.49542.1.S1_at--1080--6712Chr10:5552476..5552599 (24 bp)
GTTCTTTTACACCTAAGTGGCCAAG
LOC_Os10g10500
Os.49542.1.S1_at--330--1091Chr02:5775819..5775843 (25 bp)
AGTGGCCAAGTGTATGCGTGTAAAT
NONE
Os.49542.1.S1_at--273--6071Chr02:5775743..5775767 (25 bp)
GATGATTAAATCACTCTGTAAACAT
NONE
Target Sequence 
GAACAGCCGGAACCCTTCGTCGTAGCCGTCGGAGTACGGGACGTAGGAGATCCCGCCGCCGCCGGCGTCGGCGTCGTGGA
CCTCCTCGTCGGGGGCGGCGAGGGACGGGAACATGCGCCGGTGCGCCGACACGGCGACGGACAGGGTGACGTGCGCGCCG
GTGGCGCGGGCGAGGCGCGCGGCGAGGGCTCGGGCCGGGTTGATGTGGCCCTGGCCAGGGTACGCGACGACGAGGAAGTG
CTGGCGCGCCATGGCCGGAGTTGGGGTAGCTTGTGTTCGCGACAAAGACAAGCTTTGGGTGTTGAGAGATGTAGCCTGCA
TTGCCTGCCAGTATATATGGCTGTTCTTTTACACCTAAGTGGCCAAGTGTATGCGTGTAAATGTGTGATAAGTAGTTGTG
AAAAAATTGATAAGATTTAACAAGATATATCATGATGATTAAATCACTCTGTAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis