Browse Element(s) Details


Os.49545.1.S1_at

Description gb:AK110972.1
DB_XREF= gi:32996181
TID=Os.49545.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-B12, full insert sequence.
FL= gb:AK110972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3203011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31990OsAffx.20387.1.S1_x_at1/1111+18345714..18351704retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g32000NANA11+18352264..18355291retrotransposon protein, putative, unclassified
LOC_Os11g32010NANA11+18366471..18366890hypothetical protein
LOC_Os11g32020NANA11+18369477..18370165hypothetical protein
LOC_Os11g32030Os.49545.1.S1_at11/1111+18372678..18375602NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os11g32040NANA11+18382099..18382452hypothetical protein
LOC_Os11g32050NANA11+18384484..18386441expressed protein
LOC_Os11g32060NANA11+18387372..18392264retrotransposon protein, putative, unclassified
LOC_Os11g32070OsAffx.31260.1.S1_at11/1111+18397584..18398977LGC1, putative
LOC_Os11g32080OsAffx.7272.1.S1_at11/1111+18399610..18400109LGC1, putative

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49545.1.S1_at--619--3331Chr11:18375045..18375069 (25 bp)
CACGTACCCGTACTCGGTGTCCAAG
LOC_Os11g32030
Os.49545.1.S1_at--25--1911Chr11:18375320..18375344 (25 bp)
ACGTGTCCGGGCACAACCTGGTGGT
LOC_Os11g32030
Os.49545.1.S1_at--257--7531Chr11:18375343..18375367 (25 bp)
GTGGACGGCGGCTTCACCAGCTACA
LOC_Os11g32030
Os.49545.1.S1_at--593--1671Chr11:18375386..18375410 (25 bp)
AGCCGCACGATTGAGCTGATCGGAC
LOC_Os11g32030
Os.49545.1.S1_at--775--491Chr11:18375404..18375428 (25 bp)
ATCGGACGGCCACGGAAGATCCGTT
LOC_Os11g32030
Os.49545.1.S1_at--463--3951Chr11:18375416..18375440 (25 bp)
CGGAAGATCCGTTTGGTGTAGAGAT
LOC_Os11g32030
Os.49545.1.S1_at--1122--7671Chr11:18375443..18375467 (25 bp)
GGGTTATGTGAATCCTCTATCCTGG
LOC_Os11g32030
Os.49545.1.S1_at--765--751Chr11:18375448..18375472 (25 bp)
ATGTGAATCCTCTATCCTGGAAAGG
LOC_Os11g32030
Os.49545.1.S1_at--195--10391Chr11:18375521..18375545 (25 bp)
TTTTCTTATCTGGTTAGTGTGTGGG
LOC_Os11g32030
Os.49545.1.S1_at--654--7713Chr12:17723278..17723297 (20 bp)
GGGTGAAATTCTGGATGTCTGAAAT
NONE
Os.49545.1.S1_at--15--3651Chr11:18375578..18375602 (25 bp)
CTTAAAAGTTGAGTACGTGCATGGG
LOC_Os11g32030
Target Sequence 
CACGTACCCGTACTCGGTGTCCAAGTTCGCCGTGGCGGGCGCCGTCAGGGCCGCCGCCGCCGAGCTGTCGCGCCACGGCG
TCCGCGTCAACTGCGTCTCGCCGTTCGCCGTGGCGACGCCGATGGTGGTGGCGCAGTTCGCGCAGATGCTCGGCGGCGCC
GACGAGGCGCGGGTGGCAGCGGTGGTGAGGGGGCTCGGCGAGCTGAGGGGCGCGGCGTGCGAGGCGGAGGACGTGGCGAG
GGCGGCGGCGTACCTCGCCTCCGACGACGCCAAGTACGTGTCCGGGCACAACCTGGTGGTGGACGGCGGCTTCACCAGCT
ACAAGCACCTGCCGATTCCCCAGCCGCACGATTGAGCTGATCGGACGGCCACGGAAGATCCGTTTGGTGTAGAGATGGGG
GTTATGTGAATCCTCTATCCTGGAAAGGAAGTGGATTCGAGTAGAGAGAAAAAGGATTGTGGATTTTTAGGTGGTTTTTT
TTTCTTATCTGGTTAGTGTGTGGGTGAAATTCTGGATGTCTGAAATTTGGTTAAAACTTAAAAGTTGAGTACGTGCATGG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis