Browse Element(s) Details


OsAffx.31260.1.S1_at

Description tigr:9639.m02914
TID=OsAffx.31260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=LGC1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3207011/11LGC1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32030Os.49545.1.S1_at11/1111+18372678..18375602NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os11g32040NANA11+18382099..18382452hypothetical protein
LOC_Os11g32050NANA11+18384484..18386441expressed protein
LOC_Os11g32060NANA11+18387372..18392264retrotransposon protein, putative, unclassified
LOC_Os11g32070OsAffx.31260.1.S1_at11/1111+18397584..18398977LGC1, putative
LOC_Os11g32080OsAffx.7272.1.S1_at11/1111+18399610..18400109LGC1, putative
LOC_Os11g32090OsAffx.19114.1.S1_x_at11/1111+18402470..18403162Geranylgeranyl transferase type II beta subunit, putative
LOC_Os11g32100Os.56356.1.S1_at11/1111+18420661..18423855Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31260.1.S1_at--85--4471Chr11:18397614..18397638 (25 bp)
GCCTGCTTGCTATCTTCCATTAACA
LOC_Os11g32070
OsAffx.31260.1.S1_at--396--4871Chr11:18397622..18397646 (25 bp)
GCTATCTTCCATTAACAACAGAGGT
LOC_Os11g32070
OsAffx.31260.1.S1_at--439--2491Chr11:18398659..18398678 (20 bp)
AACAGAGGTGAAGCGGCCAGCTGCT
LOC_Os11g32070
OsAffx.31260.1.S1_at--766--2091Chr11:18398688..18398712 (25 bp)
ACATCGTGGTGAAGCAGACGGCGAC
LOC_Os11g32070
OsAffx.31260.1.S1_at--922--2491Chr11:18398759..18398783 (25 bp)
AACATGTGCGGGTGCCCACAGTCCG
LOC_Os11g32070
OsAffx.31260.1.S1_at--884--8351Chr11:18398794..18398818 (25 bp)
GGCGTGTGACGGCTTCGACACCACC
LOC_Os11g32070
OsAffx.31260.1.S1_at--69--5171Chr11:18398859..18398883 (25 bp)
GCAACCTCTGCCTAGTCAACAGCGG
LOC_Os11g32070
OsAffx.31260.1.S1_at--743--4591Chr11:18398883..18398907 (25 bp)
GCGACCCCGTTGTGCAGGGCCATGA
LOC_Os11g32070
OsAffx.31260.1.S1_at--492--9051Chr11:18398895..18398919 (25 bp)
TGCAGGGCCATGACATCACCTTCAG
LOC_Os11g32070
OsAffx.31260.1.S1_at--364--10491Chr11:18398915..18398939 (25 bp)
TTCAGCTACGCGTGGAGCTCGCAGT
LOC_Os11g32070
OsAffx.31260.1.S1_at--442--1831Chr11:18398922..18398946 (25 bp)
ACGCGTGGAGCTCGCAGTTCAAGTT
LOC_Os11g32070
Target Sequence 
GCCTGCTTGCTATCTTCCATTAACAACAGAGGTGAAGCGGCCAGCTGCTCGCTGGAGAACATCGTGGTGAAGCAGACGGC
GACGGGAGGGTGGGCCCACGGGCAGCCGGAGTACGCTGTGACGGTGAGCAACATGTGCGGGTGCCCACAGTCCGGCGTCC
AGGTGGCGTGTGACGGCTTCGACACCACCCTGGCCGTCGATCCGGCCAAGCTCCGGCCGGCTGCCGGCGGCAACCTCTGC
CTAGTCAACAGCGGCGACCCCGTTGTGCAGGGCCATGACATCACCTTCAGCTACGCGTGGAGCTCGCAGTTCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis