Browse Element(s) Details


OsAffx.7272.1.S1_at

Description tigr:9639.m02915
TID=OsAffx.7272.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3208011/11LGC1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32030Os.49545.1.S1_at11/1111+18372678..18375602NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os11g32040NANA11+18382099..18382452hypothetical protein
LOC_Os11g32050NANA11+18384484..18386441expressed protein
LOC_Os11g32060NANA11+18387372..18392264retrotransposon protein, putative, unclassified
LOC_Os11g32070OsAffx.31260.1.S1_at11/1111+18397584..18398977LGC1, putative
LOC_Os11g32080OsAffx.7272.1.S1_at11/1111+18399610..18400109LGC1, putative
LOC_Os11g32090OsAffx.19114.1.S1_x_at11/1111+18402470..18403162Geranylgeranyl transferase type II beta subunit, putative
LOC_Os11g32100Os.56356.1.S1_at11/1111+18420661..18423855Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7272.1.S1_at--417--3771Chr11:18399900..18400061 (25 bp)
CTCTGCAGCAGAGGTGAGGCTTTGT
LOC_Os11g32080
OsAffx.7272.1.S1_at--179--6211Chr11:18399885..18399909 (25 bp)
GAGGCTTTGTGCTCGCTGTCGGACC
LOC_Os11g32080
OsAffx.7272.1.S1_at--1026--10231Chr11:18399880..18399904 (25 bp)
TTTGTGCTCGCTGTCGGACCTGGTG
LOC_Os11g32080
OsAffx.7272.1.S1_at--447--5831Chr11:18399864..18399888 (25 bp)
GACCTGGTGGTGACGCAGACCACCG
LOC_Os11g32080
OsAffx.7272.1.S1_at--757--4611Chr11:18399818..18399842 (25 bp)
GCGAGCCGGAGTACCACGTCACGGT
LOC_Os11g32080
OsAffx.7272.1.S1_at--306--1891Chr11:18399803..18399827 (25 bp)
ACGTCACGGTGGAGAACCGCTGCAT
LOC_Os11g32080
OsAffx.7272.1.S1_at--673--5971Chr11:18399792..18399816 (25 bp)
GAGAACCGCTGCATCTGCACGCAAA
LOC_Os11g32080
OsAffx.7272.1.S1_at--467--4971Chr11:18399782..18399806 (25 bp)
GCATCTGCACGCAAACCGGCGTCAA
LOC_Os11g32080
OsAffx.7272.1.S1_at--24--2371Chr11:18399770..18399794 (25 bp)
AAACCGGCGTCAAGCTGTCCTGCGC
LOC_Os11g32080
OsAffx.7272.1.S1_at--936--8411Chr11:18399666..18399690 (25 bp)
GGCCGGAGCGTGTCCTTCTACTACG
LOC_Os11g32080
OsAffx.7272.1.S1_at--191--4491Chr11:18399642..18399666 (25 bp)
GCCGGCAAGACGAGGGTCAGCTTCA
LOC_Os11g32080
Target Sequence 
CTCTGCAGCAGAGGTGAGGCTTTGTGCTCGCTGTCGGACCTGGTGGTGACGCAGACCACCGTGCCGGGGCAGCAGATCGC
CGGCGAGCCGGAGTACCACGTCACGGTGGAGAACCGCTGCATCTGCACGCAAACCGGCGTCAAGCTGTCCTGCGCCGGCT
TCGACTCCTCCCCGACGCGCGTCGACCCCAGCATCATCCGCCACGACGGCGGCGGCGGCGGCCCGGTGACCAACGGCCGG
AGCGTGTCCTTCTACTACGCCGGCAAGACGAGGGTCAGCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis