Browse Element(s) Details


Os.49558.1.S1_at

Description gb:AK063590.1
DB_XREF= gi:32973608
TID=Os.49558.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-A11, full insert sequence.
FL= gb:AK063590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2917011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g29120OsAffx.22385.1.S1_x_at3/115+17025004..17030742retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g29120OsAffx.20329.1.S1_at1/115+17025004..17030742retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g29120Os.20177.1.S1_at1/115+17025004..17030742retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g29130NANA5+17035970..17038432retrotransposon protein, putative, unclassified
LOC_Os05g29140NANA5+17041144..17045370retrotransposon protein, putative, unclassified
LOC_Os05g29150NANA5+17047369..17048285hypothetical protein
LOC_Os05g29160OsAffx.18924.3.S1_at11/115+17050358..17051401hypothetical protein
LOC_Os05g29160OsAffx.18924.2.S1_x_at4/115+17050358..17051401hypothetical protein
LOC_Os05g29170Os.49558.1.S1_at11/115+17054231..17054770expressed protein
LOC_Os05g29174Os.46012.2.S1_x_at9/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29174Os.46012.3.S1_x_at6/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29174Os.27088.1.A1_x_at4/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29174Os.54691.1.S1_x_at1/115+17059911..17060975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g29676OsAffx.25718.1.S1_at2/115+17068353..17071320Zinc finger, C3HC4 type family protein
LOC_Os05g29680OsAffx.14871.1.S1_at11/115+17073457..17073885hypothetical protein
LOC_Os05g29690NANA5+17077033..17081239retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49558.1.S1_at--379--7512Chr05:17054329..17054353 (25 bp)
GTGGAGGCAGCTGTGGCCCGGCGGG
LOC_Os05g29170
Os.49558.1.S1_at--286--8351Chr05:17054529..17054553 (25 bp)
GGCGGCGCTGGTGACTGGTAGTGGT
LOC_Os05g29170
Os.49558.1.S1_at--924--8931Chr05:17054540..17054564 (25 bp)
TGACTGGTAGTGGTGGCGCCCTCCC
LOC_Os05g29170
Os.49558.1.S1_at--122--6151Chr05:17054578..17054602 (25 bp)
GAGGTGGTGCATGCGGCAGTGGTCC
LOC_Os05g29170
Os.49558.1.S1_at--428--611Chr05:17054588..17054612 (25 bp)
ATGCGGCAGTGGTCCGGCAGCAGGA
LOC_Os05g29170
Os.49558.1.S1_at--97--7492Chr06:21985221..21985245 (25 bp)
GTGGTGGCGCCCTCCTTTGATTTTT
NONE
Os.49558.1.S1_at--203--8412Chr06:21985226..21985245 (20 bp)
GGCGCCCTCCTTTGATTTTTCTTGA
NONE
Os.49558.1.S1_at--506--5411Chr05:17054702..17054726 (25 bp)
GAAGCTGACGCATCGAGCCATCTTT
LOC_Os05g29170
Os.49558.1.S1_at--685--5791Chr05:17054708..17054732 (25 bp)
GACGCATCGAGCCATCTTTTATGTA
LOC_Os05g29170
Os.49558.1.S1_at--1061--4971Chr05:17054711..17054735 (25 bp)
GCATCGAGCCATCTTTTATGTAGTT
LOC_Os05g29170
Os.49558.1.S1_at--837--4431Chr05:17054718..17054742 (25 bp)
GCCATCTTTTATGTAGTTTGTGAAT
LOC_Os05g29170
Target Sequence 
GTGGAGGCAGCTGTGGCCCGGCGGGGGTGGGAGGGGCGGCCGGCCGGGCGCGGCGCCCTCNCGTCTGCCAGATCTGGCGG
NGGGAAGGGAGGCGGCGCGCCCCNACGGCGGGACGAGAGGCAGCGACGCCCTCCCTCCGNCNGATNNGGAGGGGGGGCAT
GCGGCGGCGGTCCAGCGGCANGAGGTGGTGGTGGCCCGACGGCGGCGCTGGTGACTGGTAGTGGTGGCGCCCTCCCTCCG
TCGGATNTGGAGGTGGTGCATGCGGCAGTGGTCCGGCAGCAGGAGGTGGTGGTGACCCGGCGGCGGCAGTGGTGACCGGC
AGTGGTGGCGCCCTCCTTTGATTTTTCTTGATTTTTGTTATTAGTGAAAGATTGAAGCTGACGCATCGAGCCATCTTTTA
TGTAGTTTGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis