Browse Element(s) Details


Os.49573.1.S1_at

Description gb:AK058897.1
DB_XREF= gi:32968915
TID=Os.49573.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-H02, full insert sequence.
FL= gb:AK058897.1 gb:AK070044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3145011/11plastid division regulator MinE, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31400OsAffx.31962.1.S1_at11/1112+18863067..18863711hypothetical protein
LOC_Os12g31410OsAffx.31962.1.S1_at2/1112+18864745..18866782expressed protein
LOC_Os12g31420OsAffx.7754.1.S1_x_at9/1112+18869607..18871005hypothetical protein
LOC_Os12g31430OsAffx.19913.1.S1_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31430OsAffx.19913.1.S1_x_at11/1112+18875110..18876100Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g31440Os.7896.1.S1_at11/1112+18880310..18884363expressed protein
LOC_Os12g31440Os.7896.2.S1_at10/1112+18880310..18884363expressed protein
LOC_Os12g31450Os.49573.1.S1_at11/1112+18884734..18887126plastid division regulator MinE, putative, expressed
LOC_Os12g31460OsAffx.7755.1.S1_s_at11/1112+18889665..18892094DnaJ domain containing protein, expressed
LOC_Os12g31470NANA12+18894239..18902927retrotransposon protein, putative, unclassified
LOC_Os12g31480Os.24542.1.S1_at10/1112+18904325..18907546expressed protein
LOC_Os12g31490Os.12422.1.S1_at11/1112+18910313..18915235expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010020biological_processchloroplast fission
GO:0009507cellular_componentchloroplast
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49573.1.S1_at--492--6291Chr12:18885273..18885297 (25 bp)
GATGATACTGTTCTCCGACAGGTGT
LOC_Os12g31450
Os.49573.1.S1_at--697--1431Chr12:18885214..18885238 (25 bp)
AGAACATCGTTGAGGCACTCTCTGA
LOC_Os12g31450
Os.49573.1.S1_at--539--4711Chr12:18885137..18885161 (25 bp)
GCTGGCCTTGGCACAGTATATTCTG
LOC_Os12g31450
Os.49573.1.S1_at--1111--6871Chr12:18885122..18885146 (25 bp)
GTATATTCTGTGACCGTTCCTGTTC
LOC_Os12g31450
Os.49573.1.S1_at--930--8791Chr12:18885102..18885126 (25 bp)
TGTTCGCCGTGTCAAGCCTGAGTAC
LOC_Os12g31450
Os.49573.1.S1_at--771--5531Chr12:18885017..18885041 (25 bp)
GAAACATCAGGCAGCGTCGACGTTA
LOC_Os12g31450
Os.49573.1.S1_at--298--10631Chr12:18884990..18885014 (25 bp)
TTCGATTTCTTCGTGCCCAACAAGA
LOC_Os12g31450
Os.49573.1.S1_at--725--5471Chr12:18884967..18884991 (25 bp)
GAACTACTGACCGTTGTATTCCCCT
LOC_Os12g31450
Os.49573.1.S1_at--853--10371Chr12:18884943..18884967 (25 bp)
TTTTGCTTCCGAGTATCCCAGAACT
LOC_Os12g31450
Os.49573.1.S1_at--1130--5291Chr12:18884893..18884917 (25 bp)
GAAGGCTTTCTTCGCAATCTTGGTT
LOC_Os12g31450
Os.49573.1.S1_at--450--8291Chr12:18884849..18884873 (25 bp)
GGCTTTTGTTTGTCTCTGCGTTTCA
LOC_Os12g31450
Target Sequence 
GATGATACTGTTCTCCGACAGGTGTGAAGTGAGTGACGAGGCAAAGAAGAAGATTGTTGAGAACATCGTTGAGGCACTCT
CTGAATTCGTGGAGATAGAATCACGAGACAACGTCCAGGTGGATATCTCAACTGATGCTGGCCTTGGCACAGTATATTCT
GTGACCGTTCCTGTTCGCCGTGTCAAGCCTGAGTACCAGGAATCTGAAGAGCAGTACAGAGGGAAGATCGTAGGTGTTGA
CTTCAAGGACACTGGAGAAACATCAGGCAGCGTCGACGTTACGTTCGATTTCTTCGTGCCCAACAAGAACTACTGACCGT
TGTATTCCCCTTTTGCTTCCGAGTATCCCAGAACTCCTTGGTTAGAATGTTCAATTTGTTGAAGGCTTTCTTCGCAATCT
TGGTTAGTCTAATGTACATATCTAGGCTTTTGTTTGTCTCTGCGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis