Browse Element(s) Details


Os.12422.1.S1_at

Description gb:AK067767.1
DB_XREF= gi:32977785
TID=Os.12422.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119P15, full insert sequence.
FL= gb:AK067767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3149011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31450Os.49573.1.S1_at11/1112+18884734..18887126plastid division regulator MinE, putative, expressed
LOC_Os12g31460OsAffx.7755.1.S1_s_at11/1112+18889665..18892094DnaJ domain containing protein, expressed
LOC_Os12g31470NANA12+18894239..18902927retrotransposon protein, putative, unclassified
LOC_Os12g31480Os.24542.1.S1_at10/1112+18904325..18907546expressed protein
LOC_Os12g31490Os.12422.1.S1_at11/1112+18910313..18915235expressed protein
LOC_Os12g31499NANA12+18920200..18920980NA
LOC_Os12g31510Os.53621.1.S1_at11/1112+18926126..18927207expressed protein
LOC_Os12g31520NANA12+18930822..18931274hypothetical protein
LOC_Os12g31530OsAffx.19915.1.S1_at10/1112+18934665..18936079hAT family dimerisation domain containing protein
LOC_Os12g31530OsAffx.4453.1.S1_at1/1112+18934665..18936079hAT family dimerisation domain containing protein
LOC_Os12g31540OsAffx.31963.1.S1_at11/1112+18938881..18941966expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12422.1.S1_at--222--10031Chr12:18910982..18911079 (25 bp)
TAGAACGACTTTCCGAGCGCATGCA
LOC_Os12g31490
Os.12422.1.S1_at--830--9111Chr12:18910946..18910970 (25 bp)
TGCTGCTTGGGTTGTGCAATCCATA
LOC_Os12g31490
Os.12422.1.S1_at--587--7071Chr12:18910816..18910840 (25 bp)
GTCAAATGCGGGTTCTCTTTGGTTT
LOC_Os12g31490
Os.12422.1.S1_at--860--7791Chr12:18910766..18910790 (25 bp)
GGTCCTTGTGCATCCAGTACATGGA
LOC_Os12g31490
Os.12422.1.S1_at--876--7631Chr12:18910584..18910608 (25 bp)
GGGACCAATTGTCGCCATACTTGTT
LOC_Os12g31490
Os.12422.1.S1_at--612--10391Chr12:18910561..18910585 (25 bp)
TTTTCGAGAAGTTCCAGTTGCCGCT
LOC_Os12g31490
Os.12422.1.S1_at--673--10671Chr12:18910550..18910574 (25 bp)
TTCCAGTTGCCGCTCTAAGGTGAAA
LOC_Os12g31490
Os.12422.1.S1_at--622--8971Chr12:18910530..18910554 (25 bp)
TGAAAAATGAAACCCCGCGGCTTCT
LOC_Os12g31490
Os.12422.1.S1_at--1048--10571Chr12:18910509..18910533 (25 bp)
TTCTACGCAACTAGCCTTGGTGGAG
LOC_Os12g31490
Os.12422.1.S1_at--1120--8931Chr12:18910477..18910501 (25 bp)
TGACTCCATGAGACCTGACTTGAAG
LOC_Os12g31490
Os.12422.1.S1_at--938--9991Chr12:18910438..18910462 (25 bp)
TAGCTGTCAGCCTCTATGCGCAAAA
LOC_Os12g31490
Target Sequence 
TAGAACGACTTTCCGAGCGCATGCATTGGGAGTTGCTGCTGCTTGGGTTGTGCAATCCATAGTTGAGGTTTACAGATGTT
TTTNCGGTAAGCCTTCCAATGATCAGGCAATGTTTGATGAGATGGACAAAGTCAAACTGTTCGGGAAAAAGATATACGGC
ATAACCGTCAAATGCGGGTTCTCTTTGGTTTTTGCCTCAATAGGAGCTGGCATTGGGGTCCTTGTGCATCCAGTACATGG
ACAGTGGCTTGGTTGTACATTGGGAGATTTCGCGGGACCAATTGTCGCCATACTTGTTTTCGAGAAGTTCCAGTTGCCGC
TCTAAGGTGAAAAATGAAACCCCGCGGCTTCTACGCAACTAGCCTTGGTGGAGATCTCCATGACTCCATGAGACCTGACT
TGAAGTTCGATGAATAATTTAGCTGTCAGCCTCTATGCGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis