Browse Element(s) Details


OsAffx.31963.1.S1_at

Description tigr:9640.m03053
TID=OsAffx.31963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3154011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31490Os.12422.1.S1_at11/1112+18910313..18915235expressed protein
LOC_Os12g31499NANA12+18920200..18920980NA
LOC_Os12g31510Os.53621.1.S1_at11/1112+18926126..18927207expressed protein
LOC_Os12g31520NANA12+18930822..18931274hypothetical protein
LOC_Os12g31530OsAffx.19915.1.S1_at10/1112+18934665..18936079hAT family dimerisation domain containing protein
LOC_Os12g31530OsAffx.4453.1.S1_at1/1112+18934665..18936079hAT family dimerisation domain containing protein
LOC_Os12g31540OsAffx.31963.1.S1_at11/1112+18938881..18941966expressed protein
LOC_Os12g31550OsAffx.19916.1.S1_at8/1112+18943639..18949263hypothetical protein
LOC_Os12g31560OsAffx.19917.1.S1_at11/1112+18956069..18958083Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31963.1.S1_at--1114--2591Chr12:18941382..18941401 (20 bp)
AACGCCAGTACCAGGCCTGGGATGA
LOC_Os12g31540
OsAffx.31963.1.S1_at--232--8191Chr12:18941507..18941531 (25 bp)
GGAAGATCAAAGTGCAGTGTTTTAT
LOC_Os12g31540
OsAffx.31963.1.S1_at--464--1291Chr12:18941552..18941576 (25 bp)
AGAGACATTGTTTACGGGACACGGG
LOC_Os12g31540
OsAffx.31963.1.S1_at--424--1291Chr12:18941612..18941636 (25 bp)
AGATGCCTTCTATAGGGAGGAGGAC
LOC_Os12g31540
OsAffx.31963.1.S1_at--736--2771Chr12:18941641..18941665 (25 bp)
AAGAGGGCCAAGAGGCAGCCTTTTA
LOC_Os12g31540
OsAffx.31963.1.S1_at--229--931Chr12:18941740..18941764 (25 bp)
AGGCAGTGTTTTACAGGGATAACGA
LOC_Os12g31540
OsAffx.31963.1.S1_at--115--7631Chr12:18941856..18941880 (25 bp)
GGGAACACTGGTGCCGCTCATAGCT
LOC_Os12g31540
OsAffx.31963.1.S1_at--728--4511Chr12:18941868..18941892 (25 bp)
GCCGCTCATAGCTGGAAGTTGTCGA
LOC_Os12g31540
OsAffx.31963.1.S1_at--890--10811Chr12:18941886..18941910 (25 bp)
TTGTCGATGCACATCACGCTACCAC
LOC_Os12g31540
OsAffx.31963.1.S1_at--523--391Chr12:18941898..18941922 (25 bp)
ATCACGCTACCACTCATTGAGGTGC
LOC_Os12g31540
OsAffx.31963.1.S1_at--499--3331Chr12:18941908..18941932 (25 bp)
CACTCATTGAGGTGCATGGGCGGAT
LOC_Os12g31540
Target Sequence 
AACGCCAGTACCAGGCCTGGGATGAGGAGGAGGAAGAGCAATGGGCAACATTTTATAGAGAGGAGGAAGATCAAGGGGCA
ATGTTCTATAGGGAGGAAGAAAAGAGCAAAGCAATATTTTATAGAAAGGAGGAAGATCAAAGTGCAGTGTTTTATAGGGA
GGAGGACGTGGAGCAAGAGACATTGTTTACGGGACACGGGGAAGAGCAAGAGGCAGTGTTTTGTAGGGACGAGGAAGATG
CCTTCTATAGGGAGGAGGACGAGCAAGAGGGCCAAGAGGCAGCCTTTTATAGGGAGGAGGAGAAGCAAGAGAGAATGTTT
ACTAGGGAAGAGGAGAGGGGGTATGAAGAAGATGAAGATGAAGAGGCAGTGTTTTACAGGGATAACGAAGATGAAGATGA
AGATGAAGAGCAAGTGTTTTACAGGGATAATGAAGATGAAGATGAAGAGGCAGTGTTTTACAAGAAGGAGCAGGAGGAGG
GGAACACTGGTGCCGCTCATAGCTGGAAGTTGTCGATGCACATCACGCTACCACTCATTGAGGTGCATGGGCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis