Browse Element(s) Details


OsAffx.4453.1.S1_at

Description tigr:9633.m02585
TID=OsAffx.4453.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2827011/11hAT family dimerisation domain containing protein
LOC_Os06g392502/11hypothetical protein
LOC_Os12g315301/11hAT family dimerisation domain containing protein
LOC_Os03g282201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28220OsAffx.27056.1.S1_at11/115+16450431..16451276hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_at2/115+16459608..16460894hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_x_at1/115+16459608..16460894hypothetical protein
LOC_Os05g28250OsAffx.12179.1.S1_at2/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28250OsAffx.12179.1.S1_x_at1/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28260OsAffx.4452.1.S1_at10/115+16465997..16468463hypothetical protein
LOC_Os05g28270OsAffx.4453.1.S1_at11/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28270OsAffx.28003.2.S1_x_at2/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28270OsAffx.28003.1.S1_at1/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28280Os.1378.1.S1_at11/115+16474078..16477646DNA-binding protein, 42 kDa containing protein, expressed
LOC_Os05g28290Os.11731.1.S1_at11/115+16481663..16484384Ran-binding protein 1 homolog c, putative, expressed
LOC_Os05g28300Os.18379.1.S2_at11/115+16488396..16499850expressed protein
LOC_Os05g28300Os.18379.1.S1_at10/115+16488396..16499850expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4453.1.S1_at--134--9293Chr12:18935219..18935243 (25 bp)
TCCGTCTGTACCAAACTAAGCTAAG
LOC_Os12g31530
OsAffx.4453.1.S1_at--1135--3731Chr05:16470530..16470554 (25 bp)
CTAAGCTAAGTGTTGCTCGTCAGGT
LOC_Os05g28270
OsAffx.4453.1.S1_at--865--9632Chr06:23297566..23297587 (22 bp)
TCAGGTGCCTGAGGAAACCCCACAA
LOC_Os06g39250
OsAffx.4453.1.S1_at--600--2451Chr05:16470431..16470455 (25 bp)
AACAAGCCTCCTCATCAGGTAGTAG
LOC_Os05g28270
OsAffx.4453.1.S1_at--1109--6312Chr06:23297445..23297688 (25 bp)
GATGCAGAGCTTAACCATTACCTCA
LOC_Os06g39250
OsAffx.4453.1.S1_at--158--3131Chr05:16470324..16470348 (25 bp)
AATTTCGATCTCCTTGAGCGGTGGA
LOC_Os05g28270
OsAffx.4453.1.S1_at--10--2591Chr05:16470290..16470314 (25 bp)
AACGAACTCTTCATGTGCTAGCTCA
LOC_Os05g28270
OsAffx.4453.1.S1_at--1106--4851Chr05:16470274..16470298 (25 bp)
GCTAGCTCACTTTGCACAGGGCGTT
LOC_Os05g28270
OsAffx.4453.1.S1_at--1139--9011Chr05:16470262..16470286 (25 bp)
TGCACAGGGCGTTCTATTGGTTCCG
LOC_Os05g28270
OsAffx.4453.1.S1_at--631--10231Chr05:16470248..16470272 (25 bp)
TATTGGTTCCGGTTTCCTCTATCTC
LOC_Os05g28270
OsAffx.4453.1.S1_at--443--10671Chr05:16470235..16470259 (25 bp)
TTCCTCTATCTCTTCGGAGCATGCA
LOC_Os05g28270
Target Sequence 
TCCGTCTGTACCAAACTAAGCTAAGTGTTGCTCGTCAGGTGCCTGAGGAAACCCCACAAAAAAAGCAAAGCAAATCAAGT
GCAATGAATATGTGGAAGAAGATCAGGGGCAAGAAACAAGCCTCCTCATCAGGTAGTAGGTCAAATTGGAATCCAGATGC
AGAGCTTAACCATTACCTCAACACCAATCACACAAAACATGATCGAACATTGGATGGTGAAAATTTCGATCTCCTTGAGC
GGTGGAAAGAGAAAGAACGAACTCTTCATGTGCTAGCTCACTTTGCACAGGGCGTTCTATTGGTTCCGGTTTCCTCTATC
TCTTCGGAGCATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis