Browse Element(s) Details


OsAffx.28003.1.S1_at

Description tigr:9631.m02793
TID=OsAffx.28003.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2823011/11transposase, putative
LOC_Os06g392502/11hypothetical protein
LOC_Os05g282701/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28170Os.33673.1.A1_at8/113+16193255..16193966hypothetical protein
LOC_Os03g28180OsAffx.13092.1.S1_at10/113+16199098..16200700hypothetical protein
LOC_Os03g28190OsAffx.13093.1.S1_x_at11/113+16206420..16206953Dirigent-like protein, expressed
LOC_Os03g28204OsAffx.22940.2.S1_s_at11/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.1.S1_s_at10/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_x_at9/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.2.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.18.S1_x_at6/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.31552.2.S1_at1/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28220OsAffx.10520.1.S1_at5/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.28003.2.S1_x_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.30450.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.4453.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28230OsAffx.28003.1.S1_at11/113+16218955..16220402transposase, putative
LOC_Os03g28250Os.33920.1.S1_at7/113+16225941..16226280hypothetical protein
LOC_Os03g28260OsAffx.3354.1.S1_at11/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28260Os.11330.1.S2_at3/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28270Os.45238.1.S1_at11/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.11360.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.50390.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28003.1.S1_at--302--8511Chr03:16219999..16220022 (24 bp)
TGGAATAGGACATCTCAACCGGTAT
LOC_Os03g28230
OsAffx.28003.1.S1_at--387--10091Chr03:16219994..16220018 (25 bp)
TAGGACATCTCAACCGGTATTATTT
LOC_Os03g28230
OsAffx.28003.1.S1_at--738--7851Chr03:16219979..16220003 (25 bp)
GGTATTATTTGACACACCTCAAGGA
LOC_Os03g28230
OsAffx.28003.1.S1_at--346--3212Chr06:23298978..23299002 (25 bp)
CAAGGATAAAGCACCGGCAGGAGCA
LOC_Os06g39250
OsAffx.28003.1.S1_at--627--5951Chr03:16219940..16219964 (25 bp)
GAGCAAGGCAGACACAACTGAGCTT
LOC_Os03g28230
OsAffx.28003.1.S1_at--717--1411Chr03:16219931..16219955 (25 bp)
AGACACAACTGAGCTTCGGACCCGA
LOC_Os03g28230
OsAffx.28003.1.S1_at--673--1532Chr06:23298942..23298962 (21 bp)
AGCTTCGGACCCGACGGTTCTATGT
LOC_Os06g39250
OsAffx.28003.1.S1_at--71--4232Chr05:16471466..16471890 (25 bp)
CCGACGGTTCTATGTACTGCAAGAA
LOC_Os05g28270
OsAffx.28003.1.S1_at--469--3412Chr12:18936077..18936096 (20 bp)
CAGCAAATACAACGGCCATGATGAT
NONE
OsAffx.28003.1.S1_at--454--71Chr03:16219109..16219133 (25 bp)
ATTGCCAAGCAAAGGATAAACCAGT
LOC_Os03g28230
OsAffx.28003.1.S1_at--231--371Chr03:16218990..16219014 (25 bp)
ATCAATTCATTGCATGTTAGATGTA
LOC_Os03g28230
Target Sequence 
TGGAATAGGACATCTCAACCGGTATTATTTGACACACCTCAAGGATAAAGCACCGGCAGGAGCAAGGCAGACACAACTGA
GCTTCGGACCCGACGGTTCTATGTACTGCAAGAATTCAATTTACAATCTACTGCAAGAATTCAATTTACAATCTAGGGTG
GTTTCTATTACTCTTGACAATGCATCAGCAAATACAACGGCCATGATGATTTTGGAGTCAAATCTGCAAAGCTACATTGG
AGGTTATGTTATCCATCAGAGATGCATCTGCCACATCATCAACTTGATTGTGCAAGCAGGATTTACTGTTATTTCCAATT
TACTCAACAAGATCCGTCAAGCTGTTTCTATCATCGGGAGTCAGTCAGTGATGAAGGCGAGATTCCGGGACTATTGCCAA
GCAAAGGATAAACCAGTGAGGATGTTTGGCATTGATGTGAAACATAGGTGGAACACAACATACCTCATGCTGCGTCAACT
GAAAGGGTATGAGGAAATAATTTCTGTTTTCATCAATTCATTGCATGTTAGATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis