Browse Element(s) Details


Os.45238.1.S1_at

Description gb:NM_184610.1
DB_XREF= gi:34896309
GEN=OSJNBa0090P23.8
TID=Os.45238.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45238 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance protein (OSJNBa0090P23.8), mRNA.
PROD=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2827011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28204OsAffx.22940.2.S1_s_at11/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.1.S1_s_at10/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_x_at9/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.2.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.18.S1_x_at6/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.31552.2.S1_at1/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28220OsAffx.10520.1.S1_at5/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.28003.2.S1_x_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.30450.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.4453.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28230OsAffx.28003.1.S1_at11/113+16218955..16220402transposase, putative
LOC_Os03g28250Os.33920.1.S1_at7/113+16225941..16226280hypothetical protein
LOC_Os03g28260OsAffx.3354.1.S1_at11/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28260Os.11330.1.S2_at3/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28270Os.45238.1.S1_at11/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.11360.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.50390.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28280OsAffx.22739.1.S1_at11/113+16248292..16248855hypothetical protein
LOC_Os03g28289NANA3+16259117..16260917hypothetical protein
LOC_Os03g28300Os.14381.1.S1_at11/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.2.S1_x_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.1.S1_a_at10/113+16261544..16269240Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0005739cellular_componentmitochondrion
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45238.1.S1_at--713--5511Chr03:16236893..16236917 (25 bp)
GAAAATATCTCGCATTGACACACAG
LOC_Os03g28270
Os.45238.1.S1_at--728--851Chr03:16236738..16236759 (22 bp)
ATGGCTAATGCCAGTGTGCTTCTTC
LOC_Os03g28270
Os.45238.1.S1_at--586--7311Chr03:16236723..16236747 (25 bp)
GTGCTTCTTCCAGCTGTTTACAAGA
LOC_Os03g28270
Os.45238.1.S1_at--750--5311Chr03:16236645..16236669 (25 bp)
GAAGGTGTCTTGGTTGATAGTCTAT
LOC_Os03g28270
Os.45238.1.S1_at--1027--10151Chr03:16236613..16236637 (25 bp)
TATTCAGGGCCCGTGAACTTAGGCT
LOC_Os03g28270
Os.45238.1.S1_at--1141--2031Chr03:16236597..16236621 (25 bp)
ACTTAGGCTTAAGACGGCTCGAGTA
LOC_Os03g28270
Os.45238.1.S1_at--1084--5731Chr03:16236585..16236609 (25 bp)
GACGGCTCGAGTATTGTTATGTTTG
LOC_Os03g28270
Os.45238.1.S1_at--1098--8031Chr03:16236480..16236504 (25 bp)
GGAGATTCATCCTGGTATCACACCT
LOC_Os03g28270
Os.45238.1.S1_at--125--7311Chr03:16236432..16236456 (25 bp)
GTGCGTGTGTGATATCATTCTTTCA
LOC_Os03g28270
Os.45238.1.S1_at--1001--6151Chr03:16236002..16236025 (24 bp)
GAGGTTCATATTCCCTGAAGCCGAA
LOC_Os03g28270
Os.45238.1.S1_at--435--8991Chr03:16235987..16236011 (25 bp)
TGAAGCCGAAGTTGCATCAGAATCT
LOC_Os03g28270
Target Sequence 
GAAAATATCTCGCATTGACACACAGAGTTGGGATTTAATGAAAGTTGCGGCAGCGTTCAAGGTGATATGCTGCCCTGGAG
AAAAAAATGAACCTGAAGAATGGCTAATGCCAGTGTGCTTCTTCCAGCTGTTTACAAGACTACAACTGGAGTGGTTTAGA
GATGATGCACCTAAATATAAAGATAAGATCTTGAAGGTGTCTTGGTTGATAGTCTATAATGAAATATTCAGGGCCCGTGA
ACTTAGGCTTAAGACGGCTCGAGTATTGTTATGTTTGGTGAAGCGGGCCAAAGAGGCATATGAAGCTGAGCAAGCAGGTG
AAGCTGCAAGTGATAATGAAATTGGTCCTGATGGGAAGGAGATTCATCCTGGTATCACACCTGTAATCATTGATGAACTT
ACAGAGTGCGTGTGTGATATCATTCTTTCAGCAGGACGTAAGGAAAGACAGAGGTTCATATTCCCTGAAGCCGAAGTTGC
ATCAGAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis