Browse Element(s) Details


OsAffx.22739.1.S1_at

Description tigr:9631.m02799
TID=OsAffx.22739.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2828011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28250Os.33920.1.S1_at7/113+16225941..16226280hypothetical protein
LOC_Os03g28260OsAffx.3354.1.S1_at11/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28260Os.11330.1.S2_at3/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28270Os.45238.1.S1_at11/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.11360.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.50390.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28280OsAffx.22739.1.S1_at11/113+16248292..16248855hypothetical protein
LOC_Os03g28289NANA3+16259117..16260917hypothetical protein
LOC_Os03g28300Os.14381.1.S1_at11/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.2.S1_x_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.1.S1_a_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S2_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S1_at11/113+16272507..16275882DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22739.1.S1_at--703--7231Chr03:16248454..16248478 (25 bp)
GTCCCCAAAGTGAGTCCACACAGAA
LOC_Os03g28280
OsAffx.22739.1.S1_at--207--8071Chr03:16248511..16248535 (25 bp)
GGAGAACACACAGTGGAGGCCACCG
LOC_Os03g28280
OsAffx.22739.1.S1_at--577--3871Chr03:16248545..16248569 (25 bp)
CTGTTGTCGTCGTCGAGCGGTCAGC
LOC_Os03g28280
OsAffx.22739.1.S1_at--181--7831Chr03:16248563..16248587 (25 bp)
GGTCAGCCCCTATGGTCATGGTGGT
LOC_Os03g28280
OsAffx.22739.1.S1_at--598--6371Chr03:16248589..16248613 (25 bp)
GATCCGGTCGCCCATGAGCGCACGA
LOC_Os03g28280
OsAffx.22739.1.S1_at--593--3511Chr03:16248601..16248625 (25 bp)
CATGAGCGCACGATGGCAGATCCGG
LOC_Os03g28280
OsAffx.22739.1.S1_at--501--4591Chr03:16248606..16248630 (25 bp)
GCGCACGATGGCAGATCCGGGCACC
LOC_Os03g28280
OsAffx.22739.1.S1_at--1093--4251Chr03:16248673..16248697 (25 bp)
CCGGCTAGACATGCGTCGGCGCTGA
LOC_Os03g28280
OsAffx.22739.1.S1_at--862--10011Chr03:16248711..16248735 (25 bp)
TAGCACCGCTCGAGCGACAACACAG
LOC_Os03g28280
OsAffx.22739.1.S1_at--575--5611Chr03:16248726..16248750 (25 bp)
GACAACACAGCGTCGGACCAGTCCT
LOC_Os03g28280
OsAffx.22739.1.S1_at--852--1171Chr03:16248765..16248789 (25 bp)
AGTACAAGGCCGCATCAGCGAAGGA
LOC_Os03g28280
Target Sequence 
GTCCCCAAAGTGAGTCCACACAGAAAGAAGATCAACATCAACAAAATCACACATAGAGGAGAACACACAGTGGAGGCCAC
CGTCGTCGCCGCTGTTGTCGTCGTCGAGCGGTCAGCCCCTATGGTCATGGTGGTGGATCCGGTCGCCCATGAGCGCACGA
TGGCAGATCCGGGCACCCCCGAGCACCTATTGGGGAGGGGCGGAGAGGAGGAGGGGCAGCCGGCTAGACATGCGTCGGCG
CTGAGCCCGACACGGCCTAGCACCGCTCGAGCGACAACACAGCGTCGGACCAGTCCTGCTCGTAGGCGGGGAGTACAAGG
CCGCATCAGCGAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis