Browse Element(s) Details


Os.50390.1.S1_at

Description gb:AK120998.1
DB_XREF= gi:37990621
TID=Os.50390.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044J03, full insert sequence.
FL= gb:AK120998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3028011/11Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os05g303001/11Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g282701/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30240Os.53379.1.S1_at11/115+17441731..17445499pentatricopeptide, putative, expressed
LOC_Os05g30250Os.24873.1.S1_at11/115+17449317..17453520Glycosyl hydrolase family 1 protein, expressed
LOC_Os05g30260NANA5+17456267..17459191retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30270NANA5+17459507..17465040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30280Os.50390.1.S1_at11/115+17466361..17471435Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os05g30290OsAffx.8923.1.S1_at3/115+17473470..17476156retrotransposon protein, putative, unclassified
LOC_Os05g30300Os.50390.1.S1_at1/115+17485093..17490634Glycosyl hydrolase family 1 protein, expressed
LOC_Os05g30310OsAffx.14884.1.S1_at11/115+17492548..17495940transposon protein, putative, unclassified
LOC_Os05g30310OsAffx.30056.1.S1_at2/115+17492548..17495940transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0005739cellular_componentmitochondrion
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50390.1.S1_at--798--791Chr05:17470702..17470726 (25 bp)
ATGTGGAGAGGATCAACTATTTGCA
LOC_Os05g30280
Os.50390.1.S1_at--1101--5132Chr05:17470724..17470748 (25 bp)
GCAAAAATACATAGCAGCCACACTG
LOC_Os05g30280
Os.50390.1.S1_at--951--1492Chr05:17470736..17470760 (25 bp)
AGCAGCCACACTGAAAGCCATCAGG
LOC_Os05g30280
Os.50390.1.S1_at--1160--771Chr05:17470918..17470942 (25 bp)
ATGTGAAGGGATACTCCATGTGGTC
LOC_Os05g30280
Os.50390.1.S1_at--568--7951Chr05:17470926..17470950 (25 bp)
GGATACTCCATGTGGTCATTCATAG
LOC_Os05g30280
Os.50390.1.S1_at--684--8612Chr05:17470967..17470991 (25 bp)
TGGTGGGTATAACAGTTGGCATTAT
LOC_Os05g30280
Os.50390.1.S1_at--627--3591Chr05:17470986..17471010 (25 bp)
CATTATGGACTTGTTGCTGTCGATT
LOC_Os05g30280
Os.50390.1.S1_at--832--6671Chr05:17470998..17471022 (25 bp)
GTTGCTGTCGATTTCGGCAGCACAG
LOC_Os05g30280
Os.50390.1.S1_at--868--811Chr05:17471263..17471287 (25 bp)
ATGGTAGGGCCTAGAGTCTCAGTTG
LOC_Os05g30280
Os.50390.1.S1_at--889--2251Chr05:17471314..17471338 (25 bp)
AAATATGTGATGTTCCTAGGGTCTA
LOC_Os05g30280
Os.50390.1.S1_at--320--7391Chr05:17471320..17471344 (25 bp)
GTGATGTTCCTAGGGTCTATTTGTA
LOC_Os05g30280
Target Sequence 
ATGTGGAGAGGATCAACTATTTGCAAAAATACATAGCAGCCACACTGAAAGCCATCAGGAATGGTGCGAATGTGAAGGGA
TACTCCATGTGGTCATTCATAGATATTTACGAGATATTTGGTGGGTATAACAGTTGGCATTATGGACTTGTTGCTGTCGA
TTTCGGCAGCACAGAACGGAGAAGGCAGCCGAGACGCTCTGCTAGCTGGTACTCAGACTTCTTGAAGAACAATGCTCCCA
TCAGGGTGGAGGATGGCTCCTTTGTCTCTGCAGCCTCTCATGCTCAACTCTGAATGATGTCAATCTGTTGAGAATATGGG
TACCAGGCACCTGCACGGCCTGCATATCTTACTAAGTCGGATCCATGTATTATGTAATAGAGTAGGACTCTATCACAATG
TTACCTTGTGTTCTATGGTAGGGCCTAGAGTCTCAGTTGAATATAACCATATAATATGTTGCTGTAAATATGTGATGTTC
CTAGGGTCTATTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis