Browse Element(s) Details


Os.24873.1.S1_at

Description gb:AK105546.1
DB_XREF= gi:32990755
TID=Os.24873.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A04, full insert sequence.
FL= gb:AK105546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3025011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30210Os.50369.1.S1_at11/115+17425759..17429611expressed protein
LOC_Os05g30220Os.50239.1.S1_a_at11/115+17431777..17436949NB-ARC domain containing protein, expressed
LOC_Os05g30230NANA5+17439254..17440152hypothetical protein
LOC_Os05g30240Os.53379.1.S1_at11/115+17441731..17445499pentatricopeptide, putative, expressed
LOC_Os05g30250Os.24873.1.S1_at11/115+17449317..17453520Glycosyl hydrolase family 1 protein, expressed
LOC_Os05g30260NANA5+17456267..17459191retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30270NANA5+17459507..17465040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30280Os.50390.1.S1_at11/115+17466361..17471435Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os05g30290OsAffx.8923.1.S1_at3/115+17473470..17476156retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24873.1.S1_at--179--751Chr05:17453057..17453081 (25 bp)
ATGTTTGGCGATTACAAGGCGCATT
LOC_Os05g30250
Os.24873.1.S1_at--826--7391Chr05:17453231..17453255 (25 bp)
GTGATGGGTGCTACTACTCTGAACA
LOC_Os05g30250
Os.24873.1.S1_at--257--9911Chr05:17453245..17453269 (25 bp)
TACTCTGAACACCATCCTGTATGCT
LOC_Os05g30250
Os.24873.1.S1_at--1025--7511Chr05:17453295..17453319 (25 bp)
GTGGCATATCATCATGTATCTACCA
LOC_Os05g30250
Os.24873.1.S1_at--750--3551Chr05:17453304..17453328 (25 bp)
CATCATGTATCTACCAATTTTCAGA
LOC_Os05g30250
Os.24873.1.S1_at--1119--7831Chr05:17453346..17453370 (25 bp)
GGTACATTGGTAAAATTATCACGAA
LOC_Os05g30250
Os.24873.1.S1_at--255--891Chr05:17453382..17453406 (25 bp)
AGGCCATTCGCATGGTTTCGGGTGT
LOC_Os05g30250
Os.24873.1.S1_at--661--91Chr05:17453387..17453411 (25 bp)
ATTCGCATGGTTTCGGGTGTGCACT
LOC_Os05g30250
Os.24873.1.S1_at--92--10671Chr05:17453425..17453449 (25 bp)
TTCCTCGATAGCCAACTGTCGATGA
LOC_Os05g30250
Os.24873.1.S1_at--426--1791Chr05:17453464..17453488 (25 bp)
ACCGTTTATTCCCTCTCTCTTAATG
LOC_Os05g30250
Os.24873.1.S1_at--927--9311Chr05:17453473..17453497 (25 bp)
TCCCTCTCTCTTAATGCCATTGGAT
LOC_Os05g30250
Target Sequence 
ATGTTTGGCGATTACAAGGCGCATTTCGGCATTGTTGCCGTCGATTTTGGCAGCGAAGAACTGACAAGGCAGCCCAGGCG
CTCTGCTAGATGGTACTCGGACTTCTTGAAGAACAATGCTGTCATCAAGGTGGATGATGGTTCTGTCTCCACAGCCTTCC
ATGCTCAGCTTTGAGTGATGGGTGCTACTACTCTGAACACCATCCTGTATGCTCTCCTGCAAGAACAATTCTGTTTTAGT
GGCATATCATCATGTATCTACCAATTTTCAGAGTTGGAAGTCGTCAATAGGTACATTGGTAAAATTATCACGAAACCTGA
GATTGAGGCCATTCGCATGGTTTCGGGTGTGCACTCTGGTGTATACCCTTCCTCGATAGCCAACTGTCGATGAAAAATTT
TCTTGTAACCGTTTATTCCCTCTCTCTTAATGCCATTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis