Browse Element(s) Details


Os.50239.1.S1_a_at

Description gb:AK120289.1
DB_XREF= gi:37989912
TID=Os.50239.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50239 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050D17, full insert sequence.
FL= gb:AK067015.1 gb:AK120289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3022011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30170Os.14919.1.S1_at6/115+17404655..17406828hypothetical protein
LOC_Os05g30170Os.56216.1.S1_at2/115+17404655..17406828hypothetical protein
LOC_Os05g30170OsAffx.29313.1.S1_at1/115+17404655..17406828hypothetical protein
LOC_Os05g30180OsAffx.14881.1.S1_at11/115+17413836..17414682hypothetical protein
LOC_Os05g30180OsAffx.23565.1.S1_at1/115+17413836..17414682hypothetical protein
LOC_Os05g30180OsAffx.30241.1.S1_at1/115+17413836..17414682hypothetical protein
LOC_Os05g30190NANA5+17416559..17418145expressed protein
LOC_Os05g30200OsAffx.14882.1.S1_at11/115+17421553..17421987hypothetical protein
LOC_Os05g30210Os.50369.1.S1_at11/115+17425759..17429611expressed protein
LOC_Os05g30220Os.50239.1.S1_a_at11/115+17431777..17436949NB-ARC domain containing protein, expressed
LOC_Os05g30230NANA5+17439254..17440152hypothetical protein
LOC_Os05g30240Os.53379.1.S1_at11/115+17441731..17445499pentatricopeptide, putative, expressed
LOC_Os05g30250Os.24873.1.S1_at11/115+17449317..17453520Glycosyl hydrolase family 1 protein, expressed
LOC_Os05g30260NANA5+17456267..17459191retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g30270NANA5+17459507..17465040retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50239.1.S1_a_at--806--9911Chr05:17432471..17432495 (25 bp)
TACGTGACTGTCCACTACTGAAGGA
LOC_Os05g30220
Os.50239.1.S1_a_at--409--9231Chr05:17432186..17432210 (25 bp)
TCCAGAGTCTCACACAGCTGTTTGG
LOC_Os05g30220
Os.50239.1.S1_a_at--658--1071Chr05:17432150..17432174 (25 bp)
AGGGACCGGTTCGTATTGACTGATC
LOC_Os05g30220
Os.50239.1.S1_a_at--432--5731Chr05:17432133..17432157 (25 bp)
GACTGATCGGTCTGAGCTTCTTCTT
LOC_Os05g30220
Os.50239.1.S1_a_at--947--10211Chr05:17432106..17432130 (25 bp)
TATTCTTGTGTGGTTGCATTTCGCT
LOC_Os05g30220
Os.50239.1.S1_a_at--903--251Chr05:17432063..17432087 (25 bp)
ATATGCCTATGGACTATTACCGAGA
LOC_Os05g30220
Os.50239.1.S1_a_at--92--10251Chr05:17432026..17432050 (25 bp)
TTTGGATCTTGCTCTGTTATGTTTC
LOC_Os05g30220
Os.50239.1.S1_a_at--6--7471Chr05:17431954..17431978 (25 bp)
GTGTGCAACGTCTACTGTATTACTG
LOC_Os05g30220
Os.50239.1.S1_a_at--891--6971Chr05:17431906..17431930 (25 bp)
GTACCATGGTGCTTTTGAACTCAGG
LOC_Os05g30220
Os.50239.1.S1_a_at--1125--8972Chr09:16085507..16085913 (25 bp)
TGAACTCAGGCTACTGTTATCCTCT
NONE
Os.50239.1.S1_a_at--551--10431Chr05:17431875..17431899 (25 bp)
TTATCCTCTCTTGGAGTGTTTCCTT
LOC_Os05g30220
Target Sequence 
TACGTGACTGTCCACTACTGAAGGAGAGCTGTAGAGTACCCGATGGGGAAAGCTGGCCAAAGATTGCGCATATTCGTTGG
AAGCGTATTGACTGAATTATGCTTCAGATTCACAAGAACAAAGGAACAGAAAGTGCTGTTCCTTCGCCCCCTGCATTGCA
GACCTCCAGAGTCTCACACAGCTGTTTGGCTATGAACGAGAGGGACCGGTTCGTATTGACTGATCGGTCTGAGCTTCTTC
TTCTTATTCTTGTGTGGTTGCATTTCGCTGGCTGCTGGCTATGGTCTATATGCCTATGGACTATTACCGAGATGTATCTG
TGTATTTGGATCTTGCTCTGTTATGTTTCCTGTTTGTTCTTTTGGACTGAATTGCTTGTAGTAGCTGTTATCTATGGTGT
GCAACGTCTACTGTATTACTGCACCGGTGAAGCTTTGTATGGGAGTACCATGGTGCTTTTGAACTCAGGCTACTGTTATC
CTCTCTTGGAGTGTTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50239.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis