Browse Element(s) Details


OsAffx.14882.1.S1_at

Description tigr:9633.m02736
TID=OsAffx.14882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3020011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30160OsAffx.4474.1.S1_at11/115+17401913..17402653hypothetical protein
LOC_Os05g30170Os.14919.1.S1_at6/115+17404655..17406828hypothetical protein
LOC_Os05g30170Os.56216.1.S1_at2/115+17404655..17406828hypothetical protein
LOC_Os05g30170OsAffx.29313.1.S1_at1/115+17404655..17406828hypothetical protein
LOC_Os05g30180OsAffx.14881.1.S1_at11/115+17413836..17414682hypothetical protein
LOC_Os05g30180OsAffx.23565.1.S1_at1/115+17413836..17414682hypothetical protein
LOC_Os05g30180OsAffx.30241.1.S1_at1/115+17413836..17414682hypothetical protein
LOC_Os05g30190NANA5+17416559..17418145expressed protein
LOC_Os05g30200OsAffx.14882.1.S1_at11/115+17421553..17421987hypothetical protein
LOC_Os05g30210Os.50369.1.S1_at11/115+17425759..17429611expressed protein
LOC_Os05g30220Os.50239.1.S1_a_at11/115+17431777..17436949NB-ARC domain containing protein, expressed
LOC_Os05g30230NANA5+17439254..17440152hypothetical protein
LOC_Os05g30240Os.53379.1.S1_at11/115+17441731..17445499pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14882.1.S1_at--20--9371Chr05:17421696..17421720 (25 bp)
TCGAGCCTACCACCGTGGCTTAGGA
LOC_Os05g30200
OsAffx.14882.1.S1_at--577--4451Chr05:17421700..17421724 (25 bp)
GCCTACCACCGTGGCTTAGGAGAGG
LOC_Os05g30200
OsAffx.14882.1.S1_at--154--10031Chr05:17421830..17421854 (25 bp)
TAGAGGGAGGTAGGCTGGACTTTTC
LOC_Os05g30200
OsAffx.14882.1.S1_at--145--7711Chr05:17421858..17421882 (25 bp)
GGTGGACCTCTTAATAGGCCCGAAT
LOC_Os05g30200
OsAffx.14882.1.S1_at--1005--5811Chr05:17421862..17421886 (25 bp)
GACCTCTTAATAGGCCCGAATGAGA
LOC_Os05g30200
OsAffx.14882.1.S1_at--574--4511Chr05:17421875..17421899 (25 bp)
GCCCGAATGAGAAAATAGGTGTCCA
LOC_Os05g30200
OsAffx.14882.1.S1_at--1054--271Chr05:17421889..17421913 (25 bp)
ATAGGTGTCCACTTGCAGAAATGTA
LOC_Os05g30200
OsAffx.14882.1.S1_at--41--7471Chr05:17421893..17421917 (25 bp)
GTGTCCACTTGCAGAAATGTATTTC
LOC_Os05g30200
OsAffx.14882.1.S1_at--54--3411Chr05:17421904..17421928 (25 bp)
CAGAAATGTATTTCCGTATACGGGT
LOC_Os05g30200
OsAffx.14882.1.S1_at--814--7131Chr05:17421927..17421951 (25 bp)
GTCTTTTAAGGAGCTGGATGCGAAA
LOC_Os05g30200
OsAffx.14882.1.S1_at--1086--9771Chr05:17421933..17421957 (25 bp)
TAAGGAGCTGGATGCGAAAACACAA
LOC_Os05g30200
Target Sequence 
TCGAGCCTACCACCGTGGCTTAGGAGAGGAGGATAAGAATGAAGGAGAGGATGTGGGAGGAGTGGAGAGGCTGGAGTGGA
TAAGAATGGAGAGGATAAGGAGAGAGAATGAGGGAGTGGGTAGAATTTTTAAGGTAGAGGGAGGTAGGCTGGACTTTTCG
CAGGTGGACCTCTTAATAGGCCCGAATGAGAAAATAGGTGTCCACTTGCAGAAATGTATTTCCGTATACGGGTCTTTTAA
GGAGCTGGATGCGAAAACACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis