Browse Element(s) Details


Os.50369.1.S1_at

Description gb:AK120909.1
DB_XREF= gi:37990532
TID=Os.50369.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023033B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023033B18, full insert sequence.
FL= gb:AK120909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3021011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30160OsAffx.4474.1.S1_at11/115+17401913..17402653hypothetical protein
LOC_Os05g30170Os.14919.1.S1_at6/115+17404655..17406828hypothetical protein
LOC_Os05g30170Os.56216.1.S1_at2/115+17404655..17406828hypothetical protein
LOC_Os05g30170OsAffx.29313.1.S1_at1/115+17404655..17406828hypothetical protein
LOC_Os05g30180OsAffx.14881.1.S1_at11/115+17413836..17414682hypothetical protein
LOC_Os05g30180OsAffx.23565.1.S1_at1/115+17413836..17414682hypothetical protein
LOC_Os05g30180OsAffx.30241.1.S1_at1/115+17413836..17414682hypothetical protein
LOC_Os05g30190NANA5+17416559..17418145expressed protein
LOC_Os05g30200OsAffx.14882.1.S1_at11/115+17421553..17421987hypothetical protein
LOC_Os05g30210Os.50369.1.S1_at11/115+17425759..17429611expressed protein
LOC_Os05g30220Os.50239.1.S1_a_at11/115+17431777..17436949NB-ARC domain containing protein, expressed
LOC_Os05g30230NANA5+17439254..17440152hypothetical protein
LOC_Os05g30240Os.53379.1.S1_at11/115+17441731..17445499pentatricopeptide, putative, expressed
LOC_Os05g30250Os.24873.1.S1_at11/115+17449317..17453520Glycosyl hydrolase family 1 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50369.1.S1_at--891--1531Chr05:17429115..17429139 (25 bp)
AGCATTCAGAGCTGGTTATGCCTCC
LOC_Os05g30210
Os.50369.1.S1_at--686--6791Chr05:17429129..17429153 (25 bp)
GTTATGCCTCCTTCCAAAGTACAAA
LOC_Os05g30210
Os.50369.1.S1_at--543--6691Chr05:17429204..17429228 (25 bp)
GTTGCCAAGCAAATCATCTCTGGAG
LOC_Os05g30210
Os.50369.1.S1_at--132--2411Chr05:17429255..17429279 (25 bp)
AAACATGGGCTTCCTGTGCTTGCGA
LOC_Os05g30210
Os.50369.1.S1_at--887--1391Chr05:17429325..17429349 (25 bp)
AGACTGTTTTGGTGGCTGTGGATCC
LOC_Os05g30210
Os.50369.1.S1_at--574--8991Chr05:17429387..17429411 (25 bp)
TGAAGCTATTGGTTTCCAGCCGTCC
LOC_Os05g30210
Os.50369.1.S1_at--376--7251Chr05:17429408..17429432 (25 bp)
GTCCTGGTATCTGGTTGCTACTTAA
LOC_Os05g30210
Os.50369.1.S1_at--233--3471Chr05:17429434..17429458 (25 bp)
CAGTGGATTTTTGTCGTGCTGTCCG
LOC_Os05g30210
Os.50369.1.S1_at--314--7311Chr05:17429449..17429473 (25 bp)
GTGCTGTCCGAATATGTAGCTACAT
LOC_Os05g30210
Os.50369.1.S1_at--240--2991Chr05:17429529..17429553 (25 bp)
AATGTGAAGTGGCATGTCTCGCTCA
LOC_Os05g30210
Os.50369.1.S1_at--640--4991Chr05:17429540..17429564 (25 bp)
GCATGTCTCGCTCAGGGATCAAGAA
LOC_Os05g30210
Target Sequence 
AGCATTCAGAGCTGGTTATGCCTCCTTCCAAAGTACAAAAAGCAAGTGCAGACATAGTGGACTATGAACAAGTTCAAGAA
ACAGCTCCAGTTGCCAAGCAAATCATCTCTGGAGACAAGCGTGGACAGAAACCAAATAAGAAACATGGGCTTCCTGTGCT
TGCGAAGAAAATTAAAACTGAGAAAGATCCCGGCAATATGAAGAATGAAAAGACTGTTTTGGTGGCTGTGGATCCCCGGA
GGAGTACACGAGTTCGAAAACCCAAAACTTATTGAAGCTATTGGTTTCCAGCCGTCCTGGTATCTGGTTGCTACTTAACC
AGTGGATTTTTGTCGTGCTGTCCGAATATGTAGCTACATTGAGCCAGATGTTATATAGTTTGTTATGTAAGTAATCATAG
CAATAGGAAGGTGAAATGTGAAGTGGCATGTCTCGCTCAGGGATCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis