Browse Element(s) Details


Os.14381.1.S1_at

Description gb:AK099659.1
DB_XREF= gi:32984868
TID=Os.14381.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.14381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0090P23.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066I05, full insert sequence.
FL= gb:AK099659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2830011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28270Os.45238.1.S1_at11/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.11360.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.50390.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28280OsAffx.22739.1.S1_at11/113+16248292..16248855hypothetical protein
LOC_Os03g28289NANA3+16259117..16260917hypothetical protein
LOC_Os03g28300Os.14381.1.S1_at11/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.2.S1_x_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.1.S1_a_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S2_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S1_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28330Os.25677.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.55599.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.57465.1.S1_x_at8/113+16280041..16286369Sucrose synthase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14381.1.S1_at--1135--151Chr03:16268794..16268818 (25 bp)
ATTTTGAGTAACACACTGAGGCCAC
LOC_Os03g28300
Os.14381.1.S1_at--28--5831Chr03:16268891..16268915 (25 bp)
GACCTTCCTTCGCTGAAGTTGCAAC
LOC_Os03g28300
Os.14381.1.S1_at--536--4751Chr03:16268902..16268926 (25 bp)
GCTGAAGTTGCAACCCGTCTTCGCT
LOC_Os03g28300
Os.14381.1.S1_at--187--7151Chr03:16268918..16268942 (25 bp)
GTCTTCGCTCCATGCTAGAAGCAAG
LOC_Os03g28300
Os.14381.1.S1_at--182--5391Chr03:16268935..16268959 (25 bp)
GAAGCAAGCCAAAGTGTGACTCTGA
LOC_Os03g28300
Os.14381.1.S1_at--113--6771Chr03:16268962..16268986 (25 bp)
GTTAATTAGCATCACTCTCTGTCTG
LOC_Os03g28300
Os.14381.1.S1_at--440--3331Chr03:16268974..16268998 (25 bp)
CACTCTCTGTCTGTATATCTATCAT
LOC_Os03g28300
Os.14381.1.S1_at--1013--5191Chr03:16269066..16269090 (25 bp)
GCAATTGTATAACTCCTGCAGACCA
LOC_Os03g28300
Os.14381.1.S1_at--259--1991Chr03:16269077..16269101 (25 bp)
ACTCCTGCAGACCAAAGCTGACTAT
LOC_Os03g28300
Os.14381.1.S1_at--382--10812Chr03:16269122..16269146 (25 bp)
TTGTACATGCATGTATCCACAGCAT
LOC_Os03g28300
Os.14381.1.S1_at--560--2831Chr03:16269163..16269187 (25 bp)
AAGTAAACAGAAGCTCCCTTATCTA
LOC_Os03g28300
Target Sequence 
ATTTTGAGTAACACACTGAGGCCACTAGTGCCAACTTCATGTAACCTGGAATGGAGGAAACTGATGGAGCAGTGCTGGTC
AACTGAACCTGAGCGACGACCTTCCTTCGCTGAAGTTGCAACCCGTCTTCGCTCCATGCTAGAAGCAAGCCAAAGTGTGA
CTCTGAGAGTTAATTAGCATCACTCTCTGTCTGTATATCTATCATTTAGGTGCATGCTACAGAATTGCAAATATGAATGT
TTCTNNNNNNNNTCNNNNNNNNNNTTATATTGAGTATCGCTTATAAGTATGCAATTGTATAACTCCTGCAGACCAAAGCT
GACTATCGGGTGCCCCCTGTCTTGTATTGTACATGCATGTATCCACAGCATGAAACTGTAGGGGAAAAAGTAAACAGAAG
CTCCCTTATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis