Browse Element(s) Details


Os.55599.1.S1_at

Description gb:AK108396.1
DB_XREF= gi:32993605
TID=Os.55599.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F10, full insert sequence.
FL= gb:AK108396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2833011/11Sucrose synthase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28289NANA3+16259117..16260917hypothetical protein
LOC_Os03g28300Os.14381.1.S1_at11/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.2.S1_x_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.1.S1_a_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S2_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S1_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28330Os.25677.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.55599.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.57465.1.S1_x_at8/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28350OsAffx.13096.1.S1_at11/113+16310037..16310837hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0005986biological_processsucrose biosynthesis
GO:0009409biological_processresponse to cold
GO:0009413biological_processresponse to flooding
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016157molecular_functionsucrose synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55599.1.S1_at--1081--1091Chr03:16286168..16286192 (25 bp)
AGTGTTCTTGCTCACCTAGAACTGT
LOC_Os03g28330
Os.55599.1.S1_at--658--7311Chr03:16286138..16286162 (25 bp)
GTGCTGCTGCATACCGAAATGCCGG
LOC_Os03g28330
Os.55599.1.S1_at--246--4831Chr03:16286085..16286109 (25 bp)
GCTCATCCATGCTGCCGGAAGGAAC
LOC_Os03g28330
Os.55599.1.S1_at--155--1911Chr03:16286054..16286078 (25 bp)
ACGGAATTTTTCTTGGACTCGCGAG
LOC_Os03g28330
Os.55599.1.S1_at--1--8131Chr03:16286040..16286064 (25 bp)
GGACTCGCGAGTGATTCGATCATGG
LOC_Os03g28330
Os.55599.1.S1_at--801--9131Chr03:16286005..16286029 (25 bp)
TGCCAAAATTTTTCTCCGGGTTCAT
LOC_Os03g28330
Os.55599.1.S1_at--161--6151Chr03:16285966..16285990 (25 bp)
GAGGTGCTGCCTCTGAATGCAATTG
LOC_Os03g28330
Os.55599.1.S1_at--418--5191Chr03:16285948..16285972 (25 bp)
GCAATTGAGTGCACCTGAAACAGAA
LOC_Os03g28330
Os.55599.1.S1_at--220--9571Chr03:16285887..16285911 (25 bp)
TCTTCATGCTCGTTCTTGCGTTAGG
LOC_Os03g28330
Os.55599.1.S1_at--820--1651Chr03:16285739..16285763 (25 bp)
AGCCTGAAATTCTCACCTGGGTTTA
LOC_Os03g28330
Os.55599.1.S1_at--171--731Chr03:16285647..16285671 (25 bp)
ATGATTGTTTCTCTTTCACCTGAAT
LOC_Os03g28330
Target Sequence 
AGTGTTCTTGCTCACCTAGAACTGTCGGTGGTGCTGCTGCATACCGAAATGCCGGTAATGGCGATGATAATATGAGCGCT
CATGCTCATCCATGCTGCCGGAAGGAACACGATGACGGAATTTTTCTTGGACTCGCGAGTGATTCGATCATGGGGGGAGG
TCATGCCAAAATTTTTCTCCGGGTTCATCGGATTCAGAGGGGGAGGTGCTGCCTCTGAATGCAATTGAGTGCACCTGAAA
CAGAAAAAAGAAAAAGAAACTCTGCTTCCTTTTTTTCTCTCTCTTCATGCTCGTTCTTGCGTTAGGGGATAATAATAAGC
CGAGATCTAGTGAATATTTGGGGGGTTTAGCGAACATGATCATCGATAACGACATGGTGAGATCTAGTGGTGATGATCTT
GCTTCTGGATCTGGGGGTTTAGTTCAGCAAGCCTGAAATTCTCACCTGGGTTTAAGGTTTCTTTTATTTTTCTTTTTTCA
TCAGATTGAAGTGGATAGAATGCTAGATCTAGTAATGTCCTATGATTGTTTCTCTTTCACCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis