Browse Element(s) Details


Os.12806.1.S2_at

Description gb:AK102643.1
DB_XREF= gi:32987852
TID=Os.12806.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative heat shock protein (OSJNBa0090P23.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033100G11, full insert sequence.
FL= gb:AK102643.1 gb:AK102662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2831011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28280OsAffx.22739.1.S1_at11/113+16248292..16248855hypothetical protein
LOC_Os03g28289NANA3+16259117..16260917hypothetical protein
LOC_Os03g28300Os.14381.1.S1_at11/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.2.S1_x_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.1.S1_a_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S2_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S1_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28330Os.25677.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.55599.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.57465.1.S1_x_at8/113+16280041..16286369Sucrose synthase 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12806.1.S2_at--108--10611Chr03:16273080..16273104 (25 bp)
TTCTGTCATTCCCTTGGTCAAGGTT
LOC_Os03g28310
Os.12806.1.S2_at--700--2871Chr03:16273061..16273085 (25 bp)
AAGGTTGCTGGGTTTCGAACAGTAT
LOC_Os03g28310
Os.12806.1.S2_at--652--3071Chr03:16273028..16273052 (25 bp)
AATCAGGACCTGAATGCCATCAAGA
LOC_Os03g28310
Os.12806.1.S2_at--378--7871Chr03:16272979..16273003 (25 bp)
GGTTTTCACATGAGGTGCCCTTTTA
LOC_Os03g28310
Os.12806.1.S2_at--633--5372Chr05:29426941..29427268 (25 bp)
GAAGAAGCTCCAAATGTCCCTAAAG
NONE
Os.12806.1.S2_at--633--9351Chr03:16272904..16272928 (25 bp)
TCGACCCAGCTGCTATTTCTAAAGA
LOC_Os03g28310
Os.12806.1.S2_at--771--8191Chr03:16272852..16272876 (25 bp)
GGAATCGTCAAAGGCAACTTCTGAA
LOC_Os03g28310
Os.12806.1.S2_at--726--9671Chr03:16272787..16272811 (25 bp)
TCACCTCCCATTTTGAAGCTATAAA
LOC_Os03g28310
Os.12806.1.S2_at--458--4871Chr03:16272750..16272774 (25 bp)
GCTAGGTTCTATAGTTTCCTGCCTT
LOC_Os03g28310
Os.12806.1.S2_at--1031--6051Chr03:16272714..16272738 (25 bp)
GAGTTTTGACCATTACCTTTGCGCA
LOC_Os03g28310
Os.12806.1.S2_at--1153--7091Chr03:16272512..16272536 (25 bp)
GTCACTGTTGACTTCTGTTTTTCTT
LOC_Os03g28310
Target Sequence 
TTCTGTCATTCCCTTGGTCAAGGTTGCTGGGTTTCGAACAGTATTTCAGCGAAATCAGGACCTGAATGCCATCAAGAAAA
TTCCCAAAGAAGAGATGTTTAGGTTTTCACATGAGGTGCCCTTTTATAGGATGTCAGGGGAAGAAGCTCCAAATGTCCCT
AAAGATAGCTATGAGCTCGACCCAGCTGCTATTTCTAAAGAACTTCTTCAGGAGATCACAGAAACAGTGGAATCGTCAAA
GGCAACTTCTGAATGCTGAGTAAAACAGTTGATTGCTTCCAAGATGCCTCTGTTCACCTCCCATTTTGAAGCTATAAATA
TGTAGACAACGCTAGGTTCTATAGTTTCCTGCCTTTTATTACTTTTGAGTTTTGACCATTACCTTTGCGCACTAGGATAG
TTTGAGCTAATCATTCAGGGGAATAGGGGGATAGCTTCTGTTGTAACTGTGGGGTGTTCTGACATGAATTTGTCGTTATA
ACTATACTATTAAGCAACTCTAGAAGATGAAGTACTAATTAGAAGCTCATGTGNCAGTTTGTCAGTGGAAGCTTTTAGGA
GATTTATGGTCACTGTTGACTTCTGTTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12806.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis