Browse Element(s) Details


Os.12806.1.S1_at

Description gb:AK102662.1
DB_XREF= gi:32987871
TID=Os.12806.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative heat shock protein (OSJNBa0090P23.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101I24, full insert sequence.
FL= gb:AK102643.1 gb:AK102662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2831011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28280OsAffx.22739.1.S1_at11/113+16248292..16248855hypothetical protein
LOC_Os03g28289NANA3+16259117..16260917hypothetical protein
LOC_Os03g28300Os.14381.1.S1_at11/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.2.S1_x_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28300Os.14381.1.S1_a_at10/113+16261544..16269240Protein kinase domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S2_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28310Os.12806.1.S1_at11/113+16272507..16275882DnaJ domain containing protein, expressed
LOC_Os03g28330Os.25677.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.55599.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.57465.1.S1_x_at8/113+16280041..16286369Sucrose synthase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12806.1.S1_at--349--6291Chr03:16273652..16273676 (25 bp)
GATGATTCTACTGCACGTCAAGCTG
LOC_Os03g28310
Os.12806.1.S1_at--5--5111Chr03:16273640..16273664 (25 bp)
GCACGTCAAGCTGCACATGTTGATC
LOC_Os03g28310
Os.12806.1.S1_at--449--3871Chr03:16273543..16273567 (25 bp)
CTGATCCTGATTTCCATGACTTCGA
LOC_Os03g28310
Os.12806.1.S1_at--740--1311Chr03:16273458..16273482 (25 bp)
AGATGGTATGCCTCGTTATTATGCA
LOC_Os03g28310
Os.12806.1.S1_at--878--9631Chr03:16273428..16273452 (25 bp)
TCAGAAAGTTCTCTCCTTGGAGCCA
LOC_Os03g28310
Os.12806.1.S1_at--336--2251Chr03:16273393..16273417 (25 bp)
AAATTAGCTTTCTCACATCAAGGAC
LOC_Os03g28310
Os.12806.1.S1_at--449--7891Chr03:16273355..16273379 (25 bp)
GGTTCTTTGAACTGGGTCTCGTCTG
LOC_Os03g28310
Os.12806.1.S1_at--880--2111Chr03:16273319..16273343 (25 bp)
ACATGTGGTGATTTCCGGATTTGTA
LOC_Os03g28310
Os.12806.1.S1_at--577--6511Chr03:16273280..16273304 (25 bp)
GATATACTCAACATGTTCTCTCACC
LOC_Os03g28310
Os.12806.1.S1_at--441--2311Chr03:16273205..16273229 (25 bp)
AAAGGTAACATCTGGGCTGTGTATC
LOC_Os03g28310
Os.12806.1.S1_at--1135--4711Chr03:16273190..16273214 (25 bp)
GCTGTGTATCGAAATTGGTCCCCTG
LOC_Os03g28310
Target Sequence 
GATGATTCTACTGCACGTCAAGCTGCACATGTTGATCCAGAGGACAATGCTTCTGTTAATAGCACAGATGCTGATGATGA
AAATGATGATCCTTTATCTTATAATGTTCCTGATCCTGATTTCCATGACTTCGATAAGGATCGTACTGAAGAATGTTTTC
AGAGTGATCAAATTTGGGCTACATATGATGATGAAGATGGTATGCCTCGTTATTATGCATTTATTCAGAAAGTTCTCTCC
TTGGAGCCATTCCAGCTCAAAATTAGCTTTCTCACATCAAGGACAAACAGTGAATTTGGTTCTTTGAACTGGGTCTCGTC
TGGCTTCACAAAGACATGTGGTGATTTCCGGATTTGTAGATATGAAACCTGTGATATACTCAACATGTTCTCTCACCAGA
TTAAATGGGAGAAAGGCCCACGTGGGGTTATAAAAATTTATCCACAGAAAGGTAACATCTGGGCTGTGTATCGAAATTGG
TCCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis