Browse Element(s) Details


OsAffx.13096.1.S1_at

Description tigr:9631.m02806
TID=OsAffx.13096.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2835011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28330Os.25677.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.55599.1.S1_at11/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28330Os.57465.1.S1_x_at8/113+16280041..16286369Sucrose synthase 2, putative, expressed
LOC_Os03g28350OsAffx.13096.1.S1_at11/113+16310037..16310837hypothetical protein
LOC_Os03g28360OsAffx.13097.1.S1_s_at11/113+16313005..16317356hypothetical protein
LOC_Os03g28360Os.46613.1.S2_at4/113+16313005..16317356hypothetical protein
LOC_Os03g28360OsAffx.8723.1.S1_at1/113+16313005..16317356hypothetical protein
LOC_Os03g28360Os.54405.1.S1_at1/113+16313005..16317356hypothetical protein
LOC_Os03g28364NANA3+16319303..16319675NA
LOC_Os03g28370NANA3+16325192..16330480retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g28380NANA3+16331869..16334241hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13096.1.S1_at--886--1931Chr03:16310252..16310276 (25 bp)
ACGGCGGTGGGCTTTGTTGCTTCCT
LOC_Os03g28350
OsAffx.13096.1.S1_at--1053--4751Chr03:16310302..16310326 (25 bp)
GCTGCAGTCGCCTACATGCAATACT
LOC_Os03g28350
OsAffx.13096.1.S1_at--106--3371Chr03:16310335..16310359 (25 bp)
CACCGTCTCTATCGCCAAGAAGGAA
LOC_Os03g28350
OsAffx.13096.1.S1_at--402--10151Chr03:16310344..16310368 (25 bp)
TATCGCCAAGAAGGAACACAGCATT
LOC_Os03g28350
OsAffx.13096.1.S1_at--462--3311Chr03:16310360..16310384 (25 bp)
CACAGCATTAGCAGGAGAGGGCGAC
LOC_Os03g28350
OsAffx.13096.1.S1_at--112--4531Chr03:16310408..16310432 (25 bp)
GCCGCCCTCCATTGCATCGATGGAA
LOC_Os03g28350
OsAffx.13096.1.S1_at--356--5411Chr03:16310430..16310454 (25 bp)
GAAGCCGAGGCCACGTCCTGTCTTG
LOC_Os03g28350
OsAffx.13096.1.S1_at--1135--4511Chr03:16310512..16310536 (25 bp)
GCCGCGTGGCTGCTAAAGCCGAAAT
LOC_Os03g28350
OsAffx.13096.1.S1_at--685--2351Chr03:16310526..16310550 (25 bp)
AAAGCCGAAATCACCGCCGGCACTG
LOC_Os03g28350
OsAffx.13096.1.S1_at--399--4531Chr03:16310712..16310736 (25 bp)
GCCGCCCACATCTTGTGTGCTGTCT
LOC_Os03g28350
OsAffx.13096.1.S1_at--675--391Chr03:16310766..16310790 (25 bp)
ATCACCGTCTTCCTAATTGTTGCGT
LOC_Os03g28350
Target Sequence 
ACGGCGGTGGGCTTTGTTGCTTCCTTTCCGCGAGCTCCGGCTCCGCCGCCGCTGCAGTCGCCTACATGCAATACTCCGCT
GGCCACCGTCTCTATCGCCAAGAAGGAACACAGCATTAGCAGGAGAGGGCGACGCCCCGTATCCCCCTGCTGCCTCGCCG
CCCTCCATTGCATCGATGGAAGCCGAGGCCACGTCCTGTCTTGCCGCCCTCATCTCGCGTGCCACCTACTGCTTCTCTCC
TCCCACGACGAAGACCCGCCGCCGCGTGGCTGCTAAAGCCGAAATCACCGCCGGCACTGCCCCTACTCCTCCCTCCATCT
GCGCCGCCGCAGGGGTCCCCTCCCGGCAGCGTCGGGATGCACCAGCGCCGAAGAGCGTCCTTTCCTTCCCACCCTCCACC
ATCGCCCGCGCTAACGCCGCCCTCCCAACCGGTACCAAGCCCTTCTCCTTCCAGTCGCTCGCCGCCCACATCTTGTGTGC
TGTCTCCCGCGCCCGCGACCTCGGCCCCTCTGACATCACCGTCTTCCTAATTGTTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis