Browse Element(s) Details


OsAffx.28003.2.S1_x_at

Description tigr:9634.m03751
TID=OsAffx.28003.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g392508/11hypothetical protein
LOC_Os05g282702/11hAT family dimerisation domain containing protein
LOC_Os03g282201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39200OsAffx.27021.1.S1_at10/116+23276563..23278020hypothetical protein
LOC_Os06g39210OsAffx.940.1.S1_x_at1/116+23278330..23281479transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g39220OsAffx.15837.1.S1_at11/116+23283633..23284301hypothetical protein
LOC_Os06g39230OsAffx.15838.1.S1_at11/116+23288527..23291318Retinal dehydrogenase 1, putative, expressed
LOC_Os06g39230Os.47977.1.A1_at9/116+23288527..23291318Retinal dehydrogenase 1, putative, expressed
LOC_Os06g39240Os.11046.1.S1_at11/116+23292261..23293076Helix-turn-helix family protein, expressed
LOC_Os06g39250OsAffx.5060.1.S1_at11/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.28003.2.S1_x_at8/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.28003.1.S1_at2/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.4453.1.S1_at2/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.30450.1.S1_at1/116+23295641..23299393hypothetical protein
LOC_Os06g39260Os.14592.1.S1_at11/116+23302674..23305969Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os06g39270NANA6+23309218..23310948Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os06g39280NANA6+23313017..23314276retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39290NANA6+23315098..23315872hypothetical protein
LOC_Os06g39300NANA6+23320521..23323294hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28003.2.S1_x_at--902--931Chr05:16471707..16471979 (25 bp)
AGGAACAGGACATCTCAAACGATAT
LOC_Os05g28270
OsAffx.28003.2.S1_x_at--292--3291Chr06:23298523..23298974 (25 bp)
CAAACGATATACTACAAGAATTCAA
LOC_Os06g39250
OsAffx.28003.2.S1_x_at--1118--3531Chr06:23298460..23298484 (25 bp)
CATCAGCAAATACAATGGGCATGAC
LOC_Os06g39250
OsAffx.28003.2.S1_x_at--86--812Chr06:23298446..23298470 (25 bp)
ATGGGCATGACGATTTTGGAGCCAA
LOC_Os06g39250
OsAffx.28003.2.S1_x_at--152--2691Chr06:23298205..23298229 (25 bp)
AAGCTGTTTCTATCATCGAGGGTCA
LOC_Os06g39250
OsAffx.28003.2.S1_x_at--1119--10211Chr06:23298152..23298176 (25 bp)
TATTGTCGAGCAAAGGATAAACCTG
LOC_Os06g39250
OsAffx.28003.2.S1_x_at--1033--3731Chr06:23298082..23298104 (23 bp)
CTCATGCTGCGTCAATTGAAAGGAG
LOC_Os06g39250
OsAffx.28003.2.S1_x_at--936--4631NONE
GCGTCAATTGAAAGGAGCATGCATT
NONE
OsAffx.28003.2.S1_x_at--1084--3151NONE
AATTGAAAGGAGCATGCATTAGTGA
NONE
OsAffx.28003.2.S1_x_at--279--3531Chr06:23297229..23297253 (25 bp)
CATGCCTTGCACCTGACATAGTTGA
LOC_Os06g39250
OsAffx.28003.2.S1_x_at--736--1533Chr04:1353703..1353722 (20 bp)
AGCATATGCAAGGACGCAACACCGG
NONE
Target Sequence 
AGGAACAGGACATCTCAAACGATATACTACAAGAATTCAATTTACAATCTAGGGTGGTTTCTATTACTCTTGACAATGCA
TCAGCAAATACAATGGGCATGACGATTTTGGAGCCAAATCTGCAAAGCTACATTGGAGGTTATGTTATCCATCAAAGATG
CATTTGCCACATCATCAACTTGATTGTGCAAGCAGGATTTACTGTTATTACCAATTTACACAACAAGATCCGTCAAGCTG
TTTCTATCATCGAGGGTCAGTCAGTGATGAAGGAGAGATTCCGGGACTATTGTCGAGCAAAGGATAAACCTGTGAGGATG
TTTGGCATTGATGTGAAACATCGGTGGAACACAACATACCTCATGCTGCGTCAATTGAAAGGAGCATGCATTAGTGAGGT
TGGAAGAATTATCGAAGAATGGAGGTCATGCCTTGCACCTGACATAGTTGAGGCAATCTTTTGCCTTAAAGACTTGATTG
AAGCATATGCAAGGACGCAACACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28003.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis