Browse Element(s) Details

Os.14592.1.S1_at

Description

gb:AK060274.1
DB_XREF= gi:32970292
TID=Os.14592.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-G07, full insert sequence.
FL= gb:AK071175.1 gb:AK060274.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39260	11/11	Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39200	OsAffx.27021.1.S1_at	10/11	6	+	23276563..23278020	hypothetical protein
LOC_Os06g39210	OsAffx.940.1.S1_x_at	1/11	6	+	23278330..23281479	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g39220	OsAffx.15837.1.S1_at	11/11	6	+	23283633..23284301	hypothetical protein
LOC_Os06g39230	OsAffx.15838.1.S1_at	11/11	6	+	23288527..23291318	Retinal dehydrogenase 1, putative, expressed
LOC_Os06g39230	Os.47977.1.A1_at	9/11	6	+	23288527..23291318	Retinal dehydrogenase 1, putative, expressed
LOC_Os06g39240	Os.11046.1.S1_at	11/11	6	+	23292261..23293076	Helix-turn-helix family protein, expressed
LOC_Os06g39250	OsAffx.5060.1.S1_at	11/11	6	+	23295641..23299393	hypothetical protein
LOC_Os06g39250	OsAffx.28003.2.S1_x_at	8/11	6	+	23295641..23299393	hypothetical protein
LOC_Os06g39250	OsAffx.28003.1.S1_at	2/11	6	+	23295641..23299393	hypothetical protein
LOC_Os06g39250	OsAffx.4453.1.S1_at	2/11	6	+	23295641..23299393	hypothetical protein
LOC_Os06g39250	OsAffx.30450.1.S1_at	1/11	6	+	23295641..23299393	hypothetical protein
LOC_Os06g39260	Os.14592.1.S1_at	11/11	6	+	23302674..23305969	Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os06g39270	NA	NA	6	+	23309218..23310948	Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os06g39280	NA	NA	6	+	23313017..23314276	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39290	NA	NA	6	+	23315098..23315872	hypothetical protein
LOC_Os06g39300	NA	NA	6	+	23320521..23323294	hypothetical protein
LOC_Os06g39310	OsAffx.20387.1.S1_x_at	1/11	6	+	23325561..23327282	transposon protein, putative, unclassified
LOC_Os06g39320	NA	NA	6	+	23327796..23329486	retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification

GO id	Type	Name
GO:0005354	molecular_function	galactose transporter activity
GO:0015165	molecular_function	pyrimidine nucleotide sugar transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.14592.1.S1_at--151--123	1	Chr06:23305519..23305543 (25 bp)	AGTTCATGAGCATTGTCATCTCCTC	LOC_Os06g39260
Os.14592.1.S1_at--919--41	1	Chr06:23305536..23305560 (25 bp)	ATCTCCTCCGTCATCAGTGGTAACC	LOC_Os06g39260
Os.14592.1.S1_at--839--979	1	Chr06:23305556..23305580 (25 bp)	TAACCCACTCTCCTTGAAGCAATGG	LOC_Os06g39260
Os.14592.1.S1_at--1139--1037	1	Chr06:23305599..23305623 (25 bp)	TTTTCTGGTCTCTCTTTACAAATCT	LOC_Os06g39260
Os.14592.1.S1_at--216--1021	1	Chr06:23305674..23305698 (25 bp)	TATTTTAGCTCATTCCAATTTGTAG	LOC_Os06g39260
Os.14592.1.S1_at--420--695	1	Chr06:23305695..23305719 (25 bp)	GTAGCTTCGATTGGACATGTTTGTT	LOC_Os06g39260
Os.14592.1.S1_at--776--1041	1	Chr06:23305741..23305765 (25 bp)	TTATTGCAGCCCATTACTGATTCAG	LOC_Os06g39260
Os.14592.1.S1_at--425--301	1	Chr06:23305816..23305840 (25 bp)	AATGCTGGTAGTTTCTGTTCTACAG	LOC_Os06g39260
Os.14592.1.S1_at--26--695	1	Chr06:23305880..23305904 (25 bp)	GTAGTAGAATTGTATGGCGCCCTGT	LOC_Os06g39260
Os.14592.1.S1_at--128--1011	1	Chr06:23305892..23305916 (25 bp)	TATGGCGCCCTGTATTTTTGTTCTC	LOC_Os06g39260
Os.14592.1.S1_at--1084--1077	1	Chr06:23305909..23305933 (25 bp)	TTGTTCTCTCCCTAAAGGAATCGCT	LOC_Os06g39260

Target Sequence

AGTTCATGAGCATTGTCATCTCCTCCGTCATCAGTGGTAACCCACTCTCCTTGAAGCAATGGGGAAGTGTTGTGATGGTN
TTTTCTGGTCTCTCTTTACAAATCTTTCTCAAATGGAAGAGAAAGAAGGTCAGAGACCACAAGGAATGAGTTNAATATTT
TAGCTCATTCCAATTTGTAGCTTCGATTGGACATGTTTGTTGTTGGGTTATATGGGAGATAATTATTGCAGCCCATTACT
GATTCAGGAGAAGTTTTACATCGATAAAAAAACTGAGATGTATGGTAATAGCTAAAAAAATGCTGGTAGTTTCTGTTCTA
CAGGAAGTCAGGAAGAAGATGCAATGAATTGTATTGCACTGAGTAGTAGAATTGTATGGCGCCCTGTATTTTTGTTCTCT
CCCTAAAGGAATCGCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis