Browse Element(s) Details


Os.47977.1.A1_at

Description gb:AK062788.1
DB_XREF= gi:32972806
TID=Os.47977.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B11, full insert sequence.
FL= gb:AK062788.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g392309/11Retinal dehydrogenase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39190OsAffx.30294.1.S1_at4/116+23264599..23269781retrotransposon protein, putative, unclassified
LOC_Os06g39190OsAffx.5954.5.S1_x_at3/116+23264599..23269781retrotransposon protein, putative, unclassified
LOC_Os06g39200OsAffx.27021.1.S1_at10/116+23276563..23278020hypothetical protein
LOC_Os06g39210OsAffx.940.1.S1_x_at1/116+23278330..23281479transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g39220OsAffx.15837.1.S1_at11/116+23283633..23284301hypothetical protein
LOC_Os06g39230OsAffx.15838.1.S1_at11/116+23288527..23291318Retinal dehydrogenase 1, putative, expressed
LOC_Os06g39230Os.47977.1.A1_at9/116+23288527..23291318Retinal dehydrogenase 1, putative, expressed
LOC_Os06g39240Os.11046.1.S1_at11/116+23292261..23293076Helix-turn-helix family protein, expressed
LOC_Os06g39250OsAffx.5060.1.S1_at11/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.28003.2.S1_x_at8/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.28003.1.S1_at2/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.4453.1.S1_at2/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.30450.1.S1_at1/116+23295641..23299393hypothetical protein
LOC_Os06g39260Os.14592.1.S1_at11/116+23302674..23305969Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os06g39270NANA6+23309218..23310948Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os06g39280NANA6+23313017..23314276retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39290NANA6+23315098..23315872hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47977.1.A1_at--131--3291Chr09:19121034..19121053 (20 bp)
CAAAGTTACGTGACTTCGATCGCAG
NONE
Os.47977.1.A1_at--798--10471NONE
TTACGTGACTTCGATCGCAGAGGAT
NONE
Os.47977.1.A1_at--386--3631Chr06:23290735..23290758 (24 bp)
CTTCGATCGCAGAGGATCTGACCAT
LOC_Os06g39230
Os.47977.1.A1_at--122--5051Chr06:23290742..23290766 (25 bp)
GCAGAGGATCTGACCATGATATGTC
LOC_Os06g39230
Os.47977.1.A1_at--437--4191Chr06:23291098..23291122 (25 bp)
CCCTGGTTCTGAGTTCTTTCTGGAT
LOC_Os06g39230
Os.47977.1.A1_at--36--10611Chr06:23291104..23291128 (25 bp)
TTCTGAGTTCTTTCTGGATCTCGTC
LOC_Os06g39230
Os.47977.1.A1_at--230--10612Chr06:23291115..23291139 (25 bp)
TTCTGGATCTCGTCGCCGATCGAGT
LOC_Os06g39230
Os.47977.1.A1_at--312--3512Chr06:23291144..23291168 (25 bp)
CATGCGTATGTACACATGTTGGTGT
LOC_Os06g39230
Os.47977.1.A1_at--351--3311Chr06:23291156..23291180 (25 bp)
CACATGTTGGTGTTGTTGGATTTGC
LOC_Os06g39230
Os.47977.1.A1_at--461--8031Chr06:23291189..23291213 (25 bp)
GGAGTATTTGTAACGGTGGAAGATT
LOC_Os06g39230
Os.47977.1.A1_at--391--7531Chr06:23291204..23291228 (25 bp)
GTGGAAGATTATTACAGAGAGTCAA
LOC_Os06g39230
Target Sequence 
CAAAGTTACGTGACTTCGATCGCAGAGGATCTGACCATGATATGTCNTATCAATTCNAAATGTTTATTATCNAAGAAACT
ACTATANTGGTAAGAGAGATTAATTTTGGGTNCAGGACGGTGGAGGAGGCGATCGAGAGGNCGAACGGGACGAGGTACGG
GCTGGCGNCGGGGCTGGTGACGAGGGACATCGACGTGGCGAACCGGATGNCGAGNTCGATCCGGNCAGGGNTGNTGTGGG
TGAACTGCTACTTCGCCATGGACAGGAGCTGCCCGTTCGGTGNCCGCAAGATGAGCGGGTTCGGCAAGGACGACAGCATG
CACGCGCTCGACAAGTTCCTCGCCGTCAAGTCCGTCGTCACCCCCGTCCATGGCTCCCCCTGGTTCTGAGTTCTTTCTGG
ATCTCGTCGCCGATCGAGTCGGNCATGCGTATGTACACATGTTGGTGTTGTTGGATTTGCTGGGTGGTGGAGTATTTGTA
ACGGTGGAAGATTATTACAGAGAGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47977.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis