Browse Element(s) Details


OsAffx.15838.1.S1_at

Description tigr:9634.m03748
TID=OsAffx.15838.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=aldehyde dehydrogenase (NAD) family protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3923011/11Retinal dehydrogenase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39190OsAffx.30294.1.S1_at4/116+23264599..23269781retrotransposon protein, putative, unclassified
LOC_Os06g39190OsAffx.5954.5.S1_x_at3/116+23264599..23269781retrotransposon protein, putative, unclassified
LOC_Os06g39200OsAffx.27021.1.S1_at10/116+23276563..23278020hypothetical protein
LOC_Os06g39210OsAffx.940.1.S1_x_at1/116+23278330..23281479transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g39220OsAffx.15837.1.S1_at11/116+23283633..23284301hypothetical protein
LOC_Os06g39230OsAffx.15838.1.S1_at11/116+23288527..23291318Retinal dehydrogenase 1, putative, expressed
LOC_Os06g39230Os.47977.1.A1_at9/116+23288527..23291318Retinal dehydrogenase 1, putative, expressed
LOC_Os06g39240Os.11046.1.S1_at11/116+23292261..23293076Helix-turn-helix family protein, expressed
LOC_Os06g39250OsAffx.5060.1.S1_at11/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.28003.2.S1_x_at8/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.28003.1.S1_at2/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.4453.1.S1_at2/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.30450.1.S1_at1/116+23295641..23299393hypothetical protein
LOC_Os06g39260Os.14592.1.S1_at11/116+23302674..23305969Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os06g39270NANA6+23309218..23310948Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os06g39280NANA6+23313017..23314276retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39290NANA6+23315098..23315872hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15838.1.S1_at--1087--3991Chr06:23290036..23290060 (25 bp)
CGTGTTCGTGCAGGAGGGCATCTAC
LOC_Os06g39230
OsAffx.15838.1.S1_at--585--1071Chr06:23290050..23290074 (25 bp)
AGGGCATCTACGACCGGTTCGAGCA
LOC_Os06g39230
OsAffx.15838.1.S1_at--929--5931Chr06:23290070..23290094 (25 bp)
GAGCAGAAGCTAGCGGACACCATGA
LOC_Os06g39230
OsAffx.15838.1.S1_at--730--5631Chr06:23290085..23290109 (25 bp)
GACACCATGAAGAGCTGGGTCGTCG
LOC_Os06g39230
OsAffx.15838.1.S1_at--424--10631Chr06:23290118..23290142 (25 bp)
TTCGATCCTCGCGTCAATCAAGGAC
LOC_Os06g39230
OsAffx.15838.1.S1_at--389--7071Chr06:23290130..23290150 (21 bp)
GTCAATCAAGGACCACAGGTGGACA
LOC_Os06g39230
OsAffx.15838.1.S1_at--432--3211Chr06:23290320..23290344 (25 bp)
CAAGGCTCAGTATGAGAGGGTGCTC
LOC_Os06g39230
OsAffx.15838.1.S1_at--33--5151Chr06:23290375..23290399 (25 bp)
GCAACTGTTCTCACGGGAGGGAAGC
LOC_Os06g39230
OsAffx.15838.1.S1_at--643--4251Chr06:23290400..23290424 (25 bp)
CCTGCGGTAAGAAAGGGTACTACAT
LOC_Os06g39230
OsAffx.15838.1.S1_at--182--531Chr06:23290423..23290447 (25 bp)
ATCGAGCCCACCATTTTCACCAATG
LOC_Os06g39230
OsAffx.15838.1.S1_at--1032--4191Chr06:23290590..23290614 (25 bp)
CCCGTCATGTGCCTGATGAAGTTCA
LOC_Os06g39230
Target Sequence 
CGTGTTCGTGCAGGAGGGCATCTACGACCGGTTCGAGCAGAAGCTAGCGGACACCATGAAGAGCTGGGTCGTCGGCGACC
CCTTCGATCCTCGCGTCAATCAAGGACCACAGGTGGACAAGGCTCAGTATGAGAGGGTGCTCGGGTACATCGAGCAAGGC
AAGGCAGAAGGGGCAACTGTTCTCACGGGAGGGAAGCCCTGCGGTAAGAAAGGGTACTACATCGAGCCCACCATTTTCAC
CAATGTGAAGGACGACATGGTCATCGCGAGGGAGGAGATCTTCGGCCCCGTCATGTGCCTGATGAAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis