Browse Element(s) Details


Os.11046.1.S1_at

Description gb:AK119729.1
DB_XREF= gi:37989352
TID=Os.11046.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-H08, full insert sequence.
FL= gb:AK119729.1 gb:AK122052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3924011/11Helix-turn-helix family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39190OsAffx.30294.1.S1_at4/116+23264599..23269781retrotransposon protein, putative, unclassified
LOC_Os06g39190OsAffx.5954.5.S1_x_at3/116+23264599..23269781retrotransposon protein, putative, unclassified
LOC_Os06g39200OsAffx.27021.1.S1_at10/116+23276563..23278020hypothetical protein
LOC_Os06g39210OsAffx.940.1.S1_x_at1/116+23278330..23281479transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g39220OsAffx.15837.1.S1_at11/116+23283633..23284301hypothetical protein
LOC_Os06g39230OsAffx.15838.1.S1_at11/116+23288527..23291318Retinal dehydrogenase 1, putative, expressed
LOC_Os06g39230Os.47977.1.A1_at9/116+23288527..23291318Retinal dehydrogenase 1, putative, expressed
LOC_Os06g39240Os.11046.1.S1_at11/116+23292261..23293076Helix-turn-helix family protein, expressed
LOC_Os06g39250OsAffx.5060.1.S1_at11/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.28003.2.S1_x_at8/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.28003.1.S1_at2/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.4453.1.S1_at2/116+23295641..23299393hypothetical protein
LOC_Os06g39250OsAffx.30450.1.S1_at1/116+23295641..23299393hypothetical protein
LOC_Os06g39260Os.14592.1.S1_at11/116+23302674..23305969Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os06g39270NANA6+23309218..23310948Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os06g39280NANA6+23313017..23314276retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39290NANA6+23315098..23315872hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0009723biological_processresponse to ethylene stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11046.1.S1_at--1117--2851Chr06:23292531..23292555 (25 bp)
AAGTGAATCCTTCGTGGCCGGAATC
LOC_Os06g39240
Os.11046.1.S1_at--368--6371Chr06:23292498..23292522 (25 bp)
GATCCCTCCTAGTTAGGCGTTGATC
LOC_Os06g39240
Os.11046.1.S1_at--456--4631Chr06:23292482..23292506 (25 bp)
GCGTTGATCCGTTTGTGAATGTGCA
LOC_Os06g39240
Os.11046.1.S1_at--148--6871Chr06:23292457..23292481 (25 bp)
GTTTGTTTGTGTTCTTGGCTTAATT
LOC_Os06g39240
Os.11046.1.S1_at--738--9811Chr06:23292410..23292434 (25 bp)
TAACTGGCTCAGACGCATGTGAAGT
LOC_Os06g39240
Os.11046.1.S1_at--827--191Chr06:23292366..23292390 (25 bp)
ATTTCCGTTGGATTTGTGAACACAT
LOC_Os06g39240
Os.11046.1.S1_at--963--1191Chr06:23292341..23292365 (25 bp)
AGTTTAGTTGAAGCGCTTTTCGATC
LOC_Os06g39240
Os.11046.1.S1_at--691--3671Chr06:23292326..23292350 (25 bp)
CTTTTCGATCCGGTTGTGTTCAATC
LOC_Os06g39240
Os.11046.1.S1_at--210--7431Chr06:23292311..23292335 (25 bp)
GTGTTCAATCGTCGTTGTGCTCTGC
LOC_Os06g39240
Os.11046.1.S1_at--447--8691Chr06:23292296..23292320 (25 bp)
TGTGCTCTGCTTCTAGTTGTGACTA
LOC_Os06g39240
Os.11046.1.S1_at--342--8951Chr06:23292277..23292301 (25 bp)
TGACTAGCTTTGTTCTCTGCTCATA
LOC_Os06g39240
Target Sequence 
AAGTGAATCCTTCGTGGCCGGAATCGCACCTCCGATCCCTCCTAGTTAGGCGTTGATCCGTTTGTGAATGTGCAGTTTGT
TTGTGTTCTTGGCTTAATTTTGGGGGGAAACTATGATATGCTAACTGGCTCAGACGCATGTGAAGTGATGATGGCTAGAA
ATTGAATTTCCGTTGGATTTGTGAACACATAGTTTAGTTGAAGCGCTTTTCGATCCGGTTGTGTTCAATCGTCGTTGTGC
TCTGCTTCTAGTTGTGACTAGCTTTGTTCTCTGCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis