Browse Element(s) Details


Os.33673.1.A1_at

Description gb:AK099576.1
DB_XREF= gi:32984785
TID=Os.33673.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33673 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0015K03.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037H02, full insert sequence.
FL= gb:AK099576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g281708/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28140OsAffx.25265.2.S1_x_at10/113+16160784..16171511phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os03g28140OsAffx.6175.1.S1_at2/113+16160784..16171511phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os03g28160NANA3+16187906..16188593Jacalin-like lectin domain containing protein, expressed
LOC_Os03g28170Os.33673.1.A1_at8/113+16193255..16193966hypothetical protein
LOC_Os03g28180OsAffx.13092.1.S1_at10/113+16199098..16200700hypothetical protein
LOC_Os03g28190OsAffx.13093.1.S1_x_at11/113+16206420..16206953Dirigent-like protein, expressed
LOC_Os03g28204OsAffx.22940.2.S1_s_at11/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.1.S1_s_at10/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_x_at9/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.2.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.18.S1_x_at6/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.31552.2.S1_at1/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28220OsAffx.10520.1.S1_at5/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.28003.2.S1_x_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.30450.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.4453.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28230OsAffx.28003.1.S1_at11/113+16218955..16220402transposase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33673.1.A1_at--585--9651Chr03:16193726..16193750 (25 bp)
TCACGTTCGAGCCATCGGAGTACGT
LOC_Os03g28170
Os.33673.1.A1_at--671--4031Chr03:16193729..16193753 (25 bp)
CGTTCGAGCCATCGGAGTACGTGAA
LOC_Os03g28170
Os.33673.1.A1_at--306--10631Chr03:16193731..16193755 (25 bp)
TTCGAGCCATCGGAGTACGTGAAGG
LOC_Os03g28170
Os.33673.1.A1_at--530--9371Chr03:16193732..16193756 (25 bp)
TCGAGCCATCGGAGTACGTGAAGGA
LOC_Os03g28170
Os.33673.1.A1_at--731--11Chr03:16193778..16193802 (25 bp)
ATCGGGGACTACACCCACGTCGTCA
LOC_Os03g28170
Os.33673.1.A1_at--791--1691Chr03:16193823..16193847 (25 bp)
AGCCAACGCACCATCGGGCCGTTCG
LOC_Os03g28170
Os.33673.1.A1_at--1051--7231Chr03:16193874..16193898 (25 bp)
GTCCCCGTCCTCAACAACGGCAGCG
LOC_Os03g28170
Os.33673.1.A1_at--418--491Chr03:16193940..16193964 (25 bp)
ATCGGCATCTACGTCCATCCATTTT
LOC_Os03g28170
Os.33673.1.A1_at--1053--8271Chr03:16193943..16193967 (25 bp)
GGCATCTACGTCCATCCATTTTGAG
NONE
Os.33673.1.A1_at--784--4971Chr03:16193944..16193968 (25 bp)
GCATCTACGTCCATCCATTTTGAGT
NONE
Os.33673.1.A1_at--1148--3531Chr03:16193945..16193969 (25 bp)
CATCTACGTCCATCCATTTTGAGTT
NONE
Target Sequence 
TCACGTTCGAGCCATCGGAGTACGTGAAGGAGGTGCACGGCTCGTGGGGCCCATCGGGGACTACACCCACGTCGTCACCT
CGCTCAAGCTCGTCACCAGCCAACGCACCATCGGGCCGTTCGGCAACGGCGCCGGCACGCCCTTCGCCGTCCCCGTCCTC
AACAACGGCAGCGTCGTCGGCTTCTTCGCCCGCGCGGGGCCCTACCTCGAGTCCATCGGCATCTACGTCCATCCATTTTG
AGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33673.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis