Browse Element(s) Details


OsAffx.4452.1.S1_at

Description tigr:9633.m02584
TID=OsAffx.4452.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2826010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28210Os.12812.1.S1_at1/115+16440849..16441243Embryonic abundant protein 1, putative
LOC_Os05g28220OsAffx.27056.1.S1_at11/115+16450431..16451276hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_at2/115+16459608..16460894hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_x_at1/115+16459608..16460894hypothetical protein
LOC_Os05g28250OsAffx.12179.1.S1_at2/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28250OsAffx.12179.1.S1_x_at1/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28260OsAffx.4452.1.S1_at10/115+16465997..16468463hypothetical protein
LOC_Os05g28270OsAffx.4453.1.S1_at11/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28270OsAffx.28003.2.S1_x_at2/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28270OsAffx.28003.1.S1_at1/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28280Os.1378.1.S1_at11/115+16474078..16477646DNA-binding protein, 42 kDa containing protein, expressed
LOC_Os05g28290Os.11731.1.S1_at11/115+16481663..16484384Ran-binding protein 1 homolog c, putative, expressed
LOC_Os05g28300Os.18379.1.S2_at11/115+16488396..16499850expressed protein
LOC_Os05g28300Os.18379.1.S1_at10/115+16488396..16499850expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4452.1.S1_at--132--9551NONE
TCTTTTCCCAACCAGCATCAAAGTT
NONE
OsAffx.4452.1.S1_at--1095--8191Chr05:16467905..16467929 (25 bp)
GGAAGTTTCACAGCTACTTGCAGAT
LOC_Os05g28260
OsAffx.4452.1.S1_at--704--5891Chr05:16467967..16467991 (25 bp)
GAGCTGGCAATCCAACTACAACCAA
LOC_Os05g28260
OsAffx.4452.1.S1_at--326--6291Chr05:16468032..16468056 (25 bp)
GATGATTTTACCTTGCTTCCCTTCT
LOC_Os05g28260
OsAffx.4452.1.S1_at--198--10651Chr05:16468048..16468072 (25 bp)
TTCCCTTCTGGCGTAGAATGTACAT
LOC_Os05g28260
OsAffx.4452.1.S1_at--744--1471Chr05:16468130..16468154 (25 bp)
AGAATCCTTCACATATCAAACAACG
LOC_Os05g28260
OsAffx.4452.1.S1_at--88--5231Chr05:16468181..16468205 (25 bp)
GAATTTCCATAGTACTGTGAACCCA
LOC_Os05g28260
OsAffx.4452.1.S1_at--941--2311Chr05:16468213..16468237 (25 bp)
AAAGGGTGATACTTGCTCTAGAAGC
LOC_Os05g28260
OsAffx.4452.1.S1_at--839--1271Chr05:16468316..16468340 (25 bp)
AGATCTTTCGTTTTTCAGGCTAGCT
LOC_Os05g28260
OsAffx.4452.1.S1_at--86--3891Chr05:16468355..16468379 (25 bp)
CTGTGATCTTATCCCTAAGCTGATA
LOC_Os05g28260
OsAffx.4452.1.S1_at--482--5431Chr05:16468406..16468430 (25 bp)
GAACCAACAAACACTAATCTCGATT
LOC_Os05g28260
Target Sequence 
TCTTTTCCCAACCAGCATCAAAGTTTTCCAAAGGAAAGGAAGTTTCACAGCTACTTGCAGATATAATATACCGTGATCTA
GTTGTTGTCAAAGTGTTTGGAGCTGGCAATCCAACTACAACCAAAATATCAACAATGATAAACACTGTATGCAACTGTGA
GGTTGATGATTTTACCTTGCTTCCCTTCTGGCGTAGAATGTACATTGTTATATTCATGGGTCCAGACAAACAAGAAGAAA
AATCTGAGAAGGCGCTTAAACAAGAATCCTTCACATATCAAACAACGAAGCTTGAATTTGAGCCTTTCAAAATGAATTTC
CATAGTACTGTGAACCCATTGCGTCAAAGGGTGATACTTGCTCTAGAAGCGTGGAACAAGGAAGGCATAGCAGAATTGCT
GGATAATTGCTGCAAGATTGAAGGATTGTATGTAGAGCATCATATAGAAGATCTTTCGTTTTTCAGGCTAGCTGCATGGA
CAACAAACTGTGATCTTATCCCTAAGCTGATAGACTGGAACATCGACATAATTGAAGAGAACCAACAAACACTAATCTCG
ATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis