Browse Element(s) Details


Os.18379.1.S1_at

Description gb:AK068211.1
DB_XREF= gi:32978229
TID=Os.18379.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023092E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146E13, full insert sequence.
FL= gb:AK068211.1 gb:AK071365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2830010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28250OsAffx.12179.1.S1_at2/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28250OsAffx.12179.1.S1_x_at1/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28260OsAffx.4452.1.S1_at10/115+16465997..16468463hypothetical protein
LOC_Os05g28270OsAffx.4453.1.S1_at11/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28270OsAffx.28003.2.S1_x_at2/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28270OsAffx.28003.1.S1_at1/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28280Os.1378.1.S1_at11/115+16474078..16477646DNA-binding protein, 42 kDa containing protein, expressed
LOC_Os05g28290Os.11731.1.S1_at11/115+16481663..16484384Ran-binding protein 1 homolog c, putative, expressed
LOC_Os05g28300Os.18379.1.S2_at11/115+16488396..16499850expressed protein
LOC_Os05g28300Os.18379.1.S1_at10/115+16488396..16499850expressed protein
LOC_Os05g28310OsAffx.14860.1.S1_at11/115+16502029..16502646hypothetical protein
LOC_Os05g28320OsAffx.4454.1.S1_at11/115+16504231..16505142Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g28330OsAffx.4455.1.S1_at9/115+16506391..16509122hypothetical protein
LOC_Os05g28340NANA5+16512960..16515729retrotransposon protein, putative, unclassified
LOC_Os05g28350OsAffx.4456.1.S1_at2/115+16522859..16523668AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18379.1.S1_at--39--2131Chr05:16495879..16495902 (24 bp)
ACAGGGAATTTTCACGGCGTGCCAT
LOC_Os05g28300
Os.18379.1.S1_at--892--9871NONE
TACATGGCCTTCTGTGGTTCTTCAA
NONE
Os.18379.1.S1_at--821--4711Chr05:16498516..16498540 (25 bp)
GCTGGCAAACATGCTGCTCTAAGTT
LOC_Os05g28300
Os.18379.1.S1_at--158--5931Chr05:16498586..16498610 (25 bp)
GAGCTTGCTGCTTTGATGAGACCCC
LOC_Os05g28300
Os.18379.1.S1_at--131--6871Chr05:16498623..16498647 (25 bp)
GTTTGTATCAGCAACTTCTCACAGA
LOC_Os05g28300
Os.18379.1.S1_at--855--1811Chr05:16498652..16498672 (21 bp)
ACCCAGATTCTGCTTCACAAGACAA
LOC_Os05g28300
Os.18379.1.S1_at--245--7591Chr05:16498870..16498894 (25 bp)
GGGCTAGTACATCAGATGCCTCTCG
LOC_Os05g28300
Os.18379.1.S1_at--198--5951Chr05:16498894..16498918 (25 bp)
GAGCAAGCAGTCACCTTACGGATCT
LOC_Os05g28300
Os.18379.1.S1_at--76--10431Chr05:16498909..16498933 (25 bp)
TTACGGATCTGTCATTTTCGAAGGA
LOC_Os05g28300
Os.18379.1.S1_at--509--5431Chr05:16499005..16499029 (25 bp)
GAACCCTGAAAACGTCTGGCCTTGG
LOC_Os05g28300
Os.18379.1.S1_at--286--8591Chr05:16499096..16499120 (25 bp)
TGGTAGCAGATCTGGGCGCCCGTCA
LOC_Os05g28300
Target Sequence 
ACAGGGAATTTTCACGGCGTGCCATGGAAAGGCTTTTGCTGATAGCGTATGAGAAATACATGGCCTTCTGTGGTTCTTCA
AGTAGCAAAAATGTAAATAGAGCTGGCAAACATGCTGCTCTAAGTTTTGTTAAACGAACAATAGCACGTTGCCAGAACTA
TGAGGAGTCAGGAGCTTGCTGCTTTGATGAGACCCCTTTCAAGGATATGTTTGTATCAGCAACTTCTCACAGAAGCGACC
CAGATTCTGCTTCACAAGACAATATTACGGTACCAAAATCAGTCCAAAGGGCTAGTACATCAGATGCCTCTCGAGCAAGC
AGTCACCTTACGGATCTGTCATTTTCGAAGGAGGATCCCTGGACAAATAATGTAAAACAACGGGAATTGTTGCTTGATGA
AGTTGTAGGTAGCATAACAGGAGGAACCCTGAAAACGTCTGGCCTTGGTACTTCCCTTNGTGAGCAACACAAAAGGAAAG
AGAAGCGAGAGGGAAGGGAAGGGGCACAACCGAGATGGTAGCAGATCTGGGCGCCCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis