Browse Element(s) Details


OsAffx.4454.1.S1_at

Description tigr:9633.m02590
TID=OsAffx.4454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2832011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28290Os.11731.1.S1_at11/115+16481663..16484384Ran-binding protein 1 homolog c, putative, expressed
LOC_Os05g28300Os.18379.1.S2_at11/115+16488396..16499850expressed protein
LOC_Os05g28300Os.18379.1.S1_at10/115+16488396..16499850expressed protein
LOC_Os05g28310OsAffx.14860.1.S1_at11/115+16502029..16502646hypothetical protein
LOC_Os05g28320OsAffx.4454.1.S1_at11/115+16504231..16505142Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g28330OsAffx.4455.1.S1_at9/115+16506391..16509122hypothetical protein
LOC_Os05g28340NANA5+16512960..16515729retrotransposon protein, putative, unclassified
LOC_Os05g28350OsAffx.4456.1.S1_at2/115+16522859..16523668AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4454.1.S1_at--824--4691Chr05:16504731..16504755 (25 bp)
GCGGCTGCATCCGTGTCGTACCAGT
LOC_Os05g28320
OsAffx.4454.1.S1_at--865--551Chr05:16504723..16504747 (25 bp)
ATCCGTGTCGTACCAGTCCATGGAT
LOC_Os05g28320
OsAffx.4454.1.S1_at--897--7451Chr05:16504719..16504743 (25 bp)
GTGTCGTACCAGTCCATGGATCTCA
LOC_Os05g28320
OsAffx.4454.1.S1_at--75--6971Chr05:16504714..16504738 (25 bp)
GTACCAGTCCATGGATCTCACCGAG
LOC_Os05g28320
OsAffx.4454.1.S1_at--583--1131Chr05:16504709..16504733 (25 bp)
AGTCCATGGATCTCACCGAGGAGGC
LOC_Os05g28320
OsAffx.4454.1.S1_at--915--5711Chr05:16504656..16504680 (25 bp)
GACTCGGTGGCGATCCCTGCGCAGT
LOC_Os05g28320
OsAffx.4454.1.S1_at--920--991Chr05:16504392..16504416 (25 bp)
AGGATGGAGCAGGACCCGTGGCTGA
LOC_Os05g28320
OsAffx.4454.1.S1_at--205--971Chr05:16504382..16504406 (25 bp)
AGGACCCGTGGCTGATGGCGATGAT
LOC_Os05g28320
OsAffx.4454.1.S1_at--232--4631Chr05:16504365..16504389 (25 bp)
GCGATGATGCGGCAGATGATCACCG
LOC_Os05g28320
OsAffx.4454.1.S1_at--852--8911Chr05:16504322..16504346 (25 bp)
TGAGCGTGGTGTACTCGCTGGTGGC
LOC_Os05g28320
OsAffx.4454.1.S1_at--1006--6971Chr05:16504312..16504336 (25 bp)
GTACTCGCTGGTGGCATCCTCCGCG
LOC_Os05g28320
Target Sequence 
GCGGCTGCATCCGTGTCGTACCAGTCCATGGATCTCACCGAGGAGGCCGACAACGACGACGAGGGCACCAGCGACGACTC
GGTGGCGATCCCTGCGCAGTCGTCGCCGGCGGCGGTCGTCGCTGGTGTCCCTGTGCTTCCGCCGCCGCCGCCCCCGGCCA
AGAGGCTGTGCGTGGCGCCGCCCACCGGCGTGGAGCACCGGGCTCCGCCGCCCGACCCGCCTACGTCGCTGTCGCTCAGC
CCGCCGGGCGCCGCCGCCGCCGCCATCTCAGCCTCCACCGTGGTCGGCGGGTCGTCGGCGGCGCGCGCGGAGGAGGAGGC
CGTGGCGAGGGAGAAGGCGAGGATGGAGCAGGACCCGTGGCTGATGGCGATGATGCGGCAGATGATCACCGAGGAGGTGC
AGCGGCAGGTGAGCGTGGTGTACTCGCTGGTGGCATCCTCCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis