Browse Element(s) Details


Os.12812.1.S1_at

Description gb:AK063677.1
DB_XREF= gi:32973695
TID=Os.12812.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E02, full insert sequence.
FL= gb:AK063677.1 gb:AK119674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g282101/11Embryonic abundant protein 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28190Os.4776.1.S1_at11/115+16424800..16428468RanBP1 domain containing protein, expressed
LOC_Os05g28190Os.18091.1.S1_at1/115+16424800..16428468RanBP1 domain containing protein, expressed
LOC_Os05g28200Os.11399.1.S1_at11/115+16433932..16439703chlorophyll synthase, ChlG family protein, expressed
LOC_Os05g28200Os.49613.1.S1_at1/115+16433932..16439703chlorophyll synthase, ChlG family protein, expressed
LOC_Os05g28210Os.12812.1.S1_at1/115+16440849..16441243Embryonic abundant protein 1, putative
LOC_Os05g28220OsAffx.27056.1.S1_at11/115+16450431..16451276hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_at2/115+16459608..16460894hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_x_at1/115+16459608..16460894hypothetical protein
LOC_Os05g28250OsAffx.12179.1.S1_at2/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28250OsAffx.12179.1.S1_x_at1/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28260OsAffx.4452.1.S1_at10/115+16465997..16468463hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12812.1.S1_at--598--6131Chr05:16440869..16440893 (25 bp)
GAGGGCATCGACATCGACGAGTCCA
LOC_Os05g28210
Os.12812.1.S1_at--359--10031Chr05:16440827..16440851 (25 bp)
TAGACTACACACACTTTTGCATCCG
NONE
Os.12812.1.S1_at--1023--8751Chr05:16440723..16440747 (25 bp)
TGTAGGTCTTGACGGATGCACGCAT
NONE
Os.12812.1.S1_at--924--4551Chr05:16440694..16440718 (25 bp)
GCGCCCGTATGATTTGCTATGTTAT
NONE
Os.12812.1.S1_at--1080--7391Chr05:16440659..16440683 (25 bp)
GTGATGCGTGCTTAGCTTTAGCTAG
NONE
Os.12812.1.S1_at--380--6871Chr05:16440626..16440650 (25 bp)
GTTTGGTTTAGGTGCTGATCGATCA
NONE
Os.12812.1.S1_at--521--1051Chr05:16440533..16440557 (25 bp)
AGGTGATGCTTTGGCTTTTCATGGC
NONE
Os.12812.1.S1_at--1135--4851Chr05:16440500..16440524 (25 bp)
GCTAGCTTCTTGTTTCCAACTGATG
NONE
Os.12812.1.S1_at--42--2571Chr05:16440483..16440507 (25 bp)
AACTGATGCCTCTGCTGGGTGTGTC
NONE
Os.12812.1.S1_at--996--7471Chr05:16440465..16440489 (25 bp)
GTGTGTCCTTTGTAACCGTGCTTGC
NONE
Os.12812.1.S1_at--846--1771Chr05:16440451..16440475 (25 bp)
ACCGTGCTTGCTTTCAGTTAATCTA
NONE
Target Sequence 
GAGGGCATCGACATCGACGAGTCCAAGTACAAGACCAAGTCCTAGACTACACACACTTTTGCATCCGTGAATGCCAGTGT
GTNCGTAGTCGTCTCAGTTGTAGTCATCNGAGTCAGTCTTAGCTAGCTAGCTCTCTTATCAATAATAATGTAGGTCTTGA
CGGATGCACGCATNTAGGCGCCCGTATGATTTGCTATGTTATGTTTCATATGGTGATGCGTGCTTAGCTTTAGCTAGCTT
TGGTAGTTTGGTTTAGGTGCTGATCGATCATGGTCAGTAGCTAGGGTATGTGTTTTAGTTTATTNCAGGATCGGTCAGGC
NAGGGGCTGAATGCTAGCTAGGTGATGCTTTGGCTTTTCATGGCCAGCAGCTGCTAGCTTCTTGTTTCCAACTGATGCCT
CTGCTGGGTGTGTCCTTTGTAACCGTGCTTGCTTTCAGTTAATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis